Hb_011918_070

Information

Type -
Description -
Location Contig11918: 103756-106998
Sequence    

Annotation

kegg
ID rcu:RCOM_0054530
description ATP binding protein, putative (EC:2.7.11.26)
nr
ID XP_012088046.1
description PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
swissprot
ID Q9LP77
description Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=2 SV=1
trembl
ID A0A067JWK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26596 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive receptor kinase at1g48480

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05675: 103792-107024 , PASA_asmbl_05676: 105521-105929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011918_070 0.0 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
2 Hb_000996_030 0.0689383312 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
3 Hb_000003_750 0.0750456664 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
4 Hb_005542_120 0.0770221968 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
5 Hb_000878_050 0.0807476116 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
6 Hb_004696_010 0.0824257846 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
7 Hb_000735_020 0.0826181058 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
8 Hb_070498_010 0.0845543113 - - receptor kinase, putative [Ricinus communis]
9 Hb_033312_070 0.0860321072 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
10 Hb_001085_190 0.092075083 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
11 Hb_001396_030 0.0941613283 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
12 Hb_168918_010 0.1005321395 - - pectin acetylesterase, putative [Ricinus communis]
13 Hb_012404_020 0.1007215985 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000112_080 0.1012695863 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
15 Hb_015048_020 0.1013473137 - - PREDICTED: myb-like protein D [Jatropha curcas]
16 Hb_085962_010 0.1018084892 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
17 Hb_005976_110 0.102016355 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
18 Hb_007811_020 0.1028206781 - - PREDICTED: expansin-A6 [Jatropha curcas]
19 Hb_004435_020 0.1033120957 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
20 Hb_003580_050 0.1034661432 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]

Gene co-expression network

sample Hb_011918_070 Hb_011918_070 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010 Hb_000735_020 Hb_000735_020 Hb_011918_070--Hb_000735_020 Hb_070498_010 Hb_070498_010 Hb_000996_030--Hb_070498_010 Hb_003580_050 Hb_003580_050 Hb_000996_030--Hb_003580_050 Hb_168918_010 Hb_168918_010 Hb_000996_030--Hb_168918_010 Hb_000977_030 Hb_000977_030 Hb_000996_030--Hb_000977_030 Hb_000996_030--Hb_004696_010 Hb_001157_050 Hb_001157_050 Hb_000003_750--Hb_001157_050 Hb_003750_120 Hb_003750_120 Hb_000003_750--Hb_003750_120 Hb_005496_040 Hb_005496_040 Hb_000003_750--Hb_005496_040 Hb_000003_750--Hb_070498_010 Hb_015048_020 Hb_015048_020 Hb_000003_750--Hb_015048_020 Hb_001117_050 Hb_001117_050 Hb_005542_120--Hb_001117_050 Hb_005542_120--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_005542_120--Hb_000392_110 Hb_001396_030 Hb_001396_030 Hb_005542_120--Hb_001396_030 Hb_000003_280 Hb_000003_280 Hb_005542_120--Hb_000003_280 Hb_004435_020 Hb_004435_020 Hb_000878_050--Hb_004435_020 Hb_000878_050--Hb_000392_110 Hb_000878_050--Hb_000003_280 Hb_004223_060 Hb_004223_060 Hb_000878_050--Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_000878_050--Hb_007904_280 Hb_004696_010--Hb_003580_050 Hb_028008_040 Hb_028008_040 Hb_004696_010--Hb_028008_040 Hb_003835_080 Hb_003835_080 Hb_004696_010--Hb_003835_080 Hb_001541_130 Hb_001541_130 Hb_004696_010--Hb_001541_130 Hb_001159_230 Hb_001159_230 Hb_004696_010--Hb_001159_230 Hb_001085_190 Hb_001085_190 Hb_000735_020--Hb_001085_190 Hb_012518_080 Hb_012518_080 Hb_000735_020--Hb_012518_080 Hb_033312_070 Hb_033312_070 Hb_000735_020--Hb_033312_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_006788_110 Hb_006788_110 Hb_000735_020--Hb_006788_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.511372 5.85518 32.9379 50.2903 0.390207 0.443429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.141593 0.0557089 0.132748 7.05153 23.7119

CAGE analysis