Hb_033312_070

Information

Type -
Description -
Location Contig33312: 84853-87267
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02960g
description hypothetical protein
nr
ID XP_006372580.1
description hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
swissprot
ID Q0WNW4
description Myosin-binding protein 3 OS=Arabidopsis thaliana GN=MYOB3 PE=1 SV=1
trembl
ID U5FLW3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34962: 85552-86587 , PASA_asmbl_34963: 87205-87850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033312_070 0.0 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
2 Hb_006788_110 0.071345603 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
3 Hb_000735_020 0.083991002 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
4 Hb_011918_070 0.0860321072 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
5 Hb_015934_080 0.0909378728 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
6 Hb_012518_080 0.1050716838 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
7 Hb_001085_190 0.1059659482 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
8 Hb_025787_020 0.1064112014 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
9 Hb_002171_020 0.1083104948 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
10 Hb_000996_030 0.1088935047 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
11 Hb_009189_100 0.1131864276 - - PREDICTED: patellin-6 [Jatropha curcas]
12 Hb_000303_060 0.1139839413 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_085962_010 0.1143092501 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
14 Hb_000005_360 0.1177115113 - - conserved hypothetical protein [Ricinus communis]
15 Hb_064546_010 0.1178105861 - - PREDICTED: peroxidase 3 [Jatropha curcas]
16 Hb_005542_120 0.1184419469 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
17 Hb_000984_130 0.1195411366 - - tubulin [Ornithogalum longebracteatum]
18 Hb_002272_120 0.120810899 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
19 Hb_001396_030 0.120983237 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
20 Hb_010264_020 0.1219031276 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_033312_070 Hb_033312_070 Hb_006788_110 Hb_006788_110 Hb_033312_070--Hb_006788_110 Hb_000735_020 Hb_000735_020 Hb_033312_070--Hb_000735_020 Hb_011918_070 Hb_011918_070 Hb_033312_070--Hb_011918_070 Hb_015934_080 Hb_015934_080 Hb_033312_070--Hb_015934_080 Hb_012518_080 Hb_012518_080 Hb_033312_070--Hb_012518_080 Hb_001085_190 Hb_001085_190 Hb_033312_070--Hb_001085_190 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_006788_110--Hb_000735_020 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_000984_130 Hb_000984_130 Hb_006788_110--Hb_000984_130 Hb_006788_110--Hb_011918_070 Hb_000735_020--Hb_001085_190 Hb_000735_020--Hb_012518_080 Hb_000735_020--Hb_011918_070 Hb_002292_080 Hb_002292_080 Hb_000735_020--Hb_002292_080 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010 Hb_009189_100 Hb_009189_100 Hb_015934_080--Hb_009189_100 Hb_002171_020 Hb_002171_020 Hb_015934_080--Hb_002171_020 Hb_003935_040 Hb_003935_040 Hb_015934_080--Hb_003935_040 Hb_007290_050 Hb_007290_050 Hb_015934_080--Hb_007290_050 Hb_000162_190 Hb_000162_190 Hb_015934_080--Hb_000162_190 Hb_012518_080--Hb_002292_080 Hb_012518_080--Hb_001085_190 Hb_000303_060 Hb_000303_060 Hb_012518_080--Hb_000303_060 Hb_012518_080--Hb_011918_070 Hb_001085_190--Hb_011918_070 Hb_009113_080 Hb_009113_080 Hb_001085_190--Hb_009113_080 Hb_000005_360 Hb_000005_360 Hb_001085_190--Hb_000005_360 Hb_003606_050 Hb_003606_050 Hb_001085_190--Hb_003606_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0744625 0.550369 2.7912 5.90687 0.0527974 0.058475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0324721 0 1.09084 2.20102

CAGE analysis