Hb_007290_050

Information

Type -
Description -
Location Contig7290: 65099-68743
Sequence    

Annotation

kegg
ID rcu:RCOM_0331520
description calmodulin binding protein, putative
nr
ID XP_012066461.1
description PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23656 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55893: 68391-68706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007290_050 0.0 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
2 Hb_009189_100 0.0679914963 - - PREDICTED: patellin-6 [Jatropha curcas]
3 Hb_000365_430 0.0826247331 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
4 Hb_001366_290 0.0931741788 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
5 Hb_015934_080 0.0964929139 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
6 Hb_000310_110 0.0975451432 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
7 Hb_001936_180 0.0984792305 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
8 Hb_000112_080 0.1021564233 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
9 Hb_026240_020 0.1034212395 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
10 Hb_001085_190 0.1084380463 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
11 Hb_000329_720 0.1108251979 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
12 Hb_002171_020 0.1124928866 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_011918_070 0.1138774612 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
14 Hb_003935_040 0.1140660011 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
15 Hb_003092_020 0.1143385137 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
16 Hb_000418_170 0.1181950473 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
17 Hb_000645_160 0.1187649993 - - protein translocase, putative [Ricinus communis]
18 Hb_149055_010 0.1192813048 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
19 Hb_000005_360 0.1196523885 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000977_030 0.1200122776 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_007290_050 Hb_007290_050 Hb_009189_100 Hb_009189_100 Hb_007290_050--Hb_009189_100 Hb_000365_430 Hb_000365_430 Hb_007290_050--Hb_000365_430 Hb_001366_290 Hb_001366_290 Hb_007290_050--Hb_001366_290 Hb_015934_080 Hb_015934_080 Hb_007290_050--Hb_015934_080 Hb_000310_110 Hb_000310_110 Hb_007290_050--Hb_000310_110 Hb_001936_180 Hb_001936_180 Hb_007290_050--Hb_001936_180 Hb_002171_020 Hb_002171_020 Hb_009189_100--Hb_002171_020 Hb_000329_720 Hb_000329_720 Hb_009189_100--Hb_000329_720 Hb_009189_100--Hb_015934_080 Hb_009189_100--Hb_000365_430 Hb_009189_100--Hb_000310_110 Hb_003092_020 Hb_003092_020 Hb_000365_430--Hb_003092_020 Hb_000365_430--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000365_430--Hb_000098_260 Hb_000365_430--Hb_000329_720 Hb_002490_060 Hb_002490_060 Hb_001366_290--Hb_002490_060 Hb_001157_050 Hb_001157_050 Hb_001366_290--Hb_001157_050 Hb_039075_020 Hb_039075_020 Hb_001366_290--Hb_039075_020 Hb_000627_040 Hb_000627_040 Hb_001366_290--Hb_000627_040 Hb_015048_020 Hb_015048_020 Hb_001366_290--Hb_015048_020 Hb_015934_080--Hb_002171_020 Hb_033312_070 Hb_033312_070 Hb_015934_080--Hb_033312_070 Hb_003935_040 Hb_003935_040 Hb_015934_080--Hb_003935_040 Hb_000162_190 Hb_000162_190 Hb_015934_080--Hb_000162_190 Hb_000310_110--Hb_003935_040 Hb_032260_060 Hb_032260_060 Hb_000310_110--Hb_032260_060 Hb_000310_110--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_000310_110--Hb_000345_230 Hb_022092_110 Hb_022092_110 Hb_001936_180--Hb_022092_110 Hb_001440_010 Hb_001440_010 Hb_001936_180--Hb_001440_010 Hb_001946_200 Hb_001946_200 Hb_001936_180--Hb_001946_200 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_000418_170 Hb_000418_170 Hb_001936_180--Hb_000418_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.96503 7.94475 11.0908 0 0.106137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0272363 0 0 2.72443 3.96349

CAGE analysis