Hb_002490_060

Information

Type -
Description -
Location Contig2490: 40959-45699
Sequence    

Annotation

kegg
ID rcu:RCOM_1055530
description hypothetical protein
nr
ID XP_012077992.1
description PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12996 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25899: 40744-46050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002490_060 0.0 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
2 Hb_000627_040 0.0624290907 - - leucine-rich repeat protein, putative [Ricinus communis]
3 Hb_006922_020 0.0639945622 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
4 Hb_001366_290 0.0692216747 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
5 Hb_006196_030 0.0858623888 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
6 Hb_007237_020 0.0863610703 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
7 Hb_007123_010 0.0897688071 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
8 Hb_039075_020 0.0906558975 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
9 Hb_004228_070 0.0912788543 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
10 Hb_002053_180 0.0934105519 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
11 Hb_021576_130 0.0961744968 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
12 Hb_005730_110 0.0999169717 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
13 Hb_000199_040 0.1004839154 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_000103_370 0.1005004273 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
15 Hb_001157_050 0.1006948152 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
16 Hb_000086_470 0.101002955 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
17 Hb_012404_020 0.1030820131 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000996_070 0.1054093754 - - unnamed protein product [Vitis vinifera]
19 Hb_026240_020 0.1055785929 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
20 Hb_004117_280 0.1061680543 - - hypothetical protein JCGZ_00361 [Jatropha curcas]

Gene co-expression network

sample Hb_002490_060 Hb_002490_060 Hb_000627_040 Hb_000627_040 Hb_002490_060--Hb_000627_040 Hb_006922_020 Hb_006922_020 Hb_002490_060--Hb_006922_020 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_007237_020 Hb_007237_020 Hb_002490_060--Hb_007237_020 Hb_007123_010 Hb_007123_010 Hb_002490_060--Hb_007123_010 Hb_000627_040--Hb_007237_020 Hb_121313_010 Hb_121313_010 Hb_000627_040--Hb_121313_010 Hb_005730_110 Hb_005730_110 Hb_000627_040--Hb_005730_110 Hb_002053_180 Hb_002053_180 Hb_000627_040--Hb_002053_180 Hb_000627_040--Hb_006922_020 Hb_006922_020--Hb_007123_010 Hb_006922_020--Hb_002053_180 Hb_000103_370 Hb_000103_370 Hb_006922_020--Hb_000103_370 Hb_004228_070 Hb_004228_070 Hb_006922_020--Hb_004228_070 Hb_001157_050 Hb_001157_050 Hb_001366_290--Hb_001157_050 Hb_039075_020 Hb_039075_020 Hb_001366_290--Hb_039075_020 Hb_001366_290--Hb_000627_040 Hb_015048_020 Hb_015048_020 Hb_001366_290--Hb_015048_020 Hb_007290_050 Hb_007290_050 Hb_001366_290--Hb_007290_050 Hb_001159_090 Hb_001159_090 Hb_006196_030--Hb_001159_090 Hb_000996_070 Hb_000996_070 Hb_006196_030--Hb_000996_070 Hb_002301_400 Hb_002301_400 Hb_006196_030--Hb_002301_400 Hb_001794_040 Hb_001794_040 Hb_006196_030--Hb_001794_040 Hb_006196_030--Hb_007123_010 Hb_000086_470 Hb_000086_470 Hb_007237_020--Hb_000086_470 Hb_007237_020--Hb_002053_180 Hb_002817_030 Hb_002817_030 Hb_007237_020--Hb_002817_030 Hb_000120_340 Hb_000120_340 Hb_007237_020--Hb_000120_340 Hb_007123_010--Hb_000103_370 Hb_021576_130 Hb_021576_130 Hb_007123_010--Hb_021576_130 Hb_007123_010--Hb_004228_070 Hb_054926_010 Hb_054926_010 Hb_007123_010--Hb_054926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0141853 3.26136 10.2129 8.34963 0.00634641 0.0335672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0143781 0 0 1.57508 4.53913

CAGE analysis