Hb_002301_400

Information

Type -
Description -
Location Contig2301: 361487-363266
Sequence    

Annotation

kegg
ID rcu:RCOM_1674270
description structural constituent of cell wall, putative
nr
ID XP_002509463.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID Q9FZA2
description Non-classical arabinogalactan protein 31 OS=Arabidopsis thaliana GN=AGP31 PE=1 SV=1
trembl
ID B9RBC9
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_1674270 PE=4 SV=1
Gene Ontology
ID GO:0005199
description pistil-specific extensin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24186: 361486-363266
cDNA
(Sanger)
(ID:Location)		 009_H04.ab1: 361927-363266 , 010_N15.ab1: 361908-363266 , 011_C05.ab1: 361875-363266 , 028_H12.ab1: 361979-363266 , 040_F08.ab1: 361923-363266 , 041_D09.ab1: 361890-363266 , 049_D23.ab1: 361940-363266

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002301_400 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_070498_010 0.074651697 - - receptor kinase, putative [Ricinus communis]
3 Hb_128196_010 0.0751191109 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012404_020 0.0817585522 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001159_090 0.0819837205 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
6 Hb_006196_030 0.0890197895 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
7 Hb_001195_550 0.0925911825 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
8 Hb_001157_050 0.0951243749 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
9 Hb_000996_070 0.0959487449 - - unnamed protein product [Vitis vinifera]
10 Hb_001221_060 0.1005515968 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
11 Hb_000120_340 0.1007622562 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_169893_010 0.1051603621 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
13 Hb_005890_020 0.1088188796 - - putative plant disease resistance family protein [Populus trichocarpa]
14 Hb_008686_010 0.1100331416 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000032_420 0.110259669 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
16 Hb_000003_750 0.111471398 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
17 Hb_000086_470 0.11159629 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
18 Hb_003750_120 0.1116180078 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
19 Hb_002639_050 0.1117226469 - - multicopper oxidase, putative [Ricinus communis]
20 Hb_002490_060 0.1133217295 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]

Gene co-expression network

sample Hb_002301_400 Hb_002301_400 Hb_070498_010 Hb_070498_010 Hb_002301_400--Hb_070498_010 Hb_128196_010 Hb_128196_010 Hb_002301_400--Hb_128196_010 Hb_012404_020 Hb_012404_020 Hb_002301_400--Hb_012404_020 Hb_001159_090 Hb_001159_090 Hb_002301_400--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002301_400--Hb_006196_030 Hb_001195_550 Hb_001195_550 Hb_002301_400--Hb_001195_550 Hb_070498_010--Hb_128196_010 Hb_000996_030 Hb_000996_030 Hb_070498_010--Hb_000996_030 Hb_070498_010--Hb_012404_020 Hb_011918_070 Hb_011918_070 Hb_070498_010--Hb_011918_070 Hb_000003_750 Hb_000003_750 Hb_070498_010--Hb_000003_750 Hb_001157_050 Hb_001157_050 Hb_128196_010--Hb_001157_050 Hb_128196_010--Hb_012404_020 Hb_001221_060 Hb_001221_060 Hb_128196_010--Hb_001221_060 Hb_005568_020 Hb_005568_020 Hb_128196_010--Hb_005568_020 Hb_005730_110 Hb_005730_110 Hb_012404_020--Hb_005730_110 Hb_001366_290 Hb_001366_290 Hb_012404_020--Hb_001366_290 Hb_028008_040 Hb_028008_040 Hb_012404_020--Hb_028008_040 Hb_000375_260 Hb_000375_260 Hb_001159_090--Hb_000375_260 Hb_001159_090--Hb_001157_050 Hb_001159_090--Hb_006196_030 Hb_003750_120 Hb_003750_120 Hb_001159_090--Hb_003750_120 Hb_000359_100 Hb_000359_100 Hb_001159_090--Hb_000359_100 Hb_002490_060 Hb_002490_060 Hb_006196_030--Hb_002490_060 Hb_000996_070 Hb_000996_070 Hb_006196_030--Hb_000996_070 Hb_001794_040 Hb_001794_040 Hb_006196_030--Hb_001794_040 Hb_007123_010 Hb_007123_010 Hb_006196_030--Hb_007123_010 Hb_169893_010 Hb_169893_010 Hb_001195_550--Hb_169893_010 Hb_008686_010 Hb_008686_010 Hb_001195_550--Hb_008686_010 Hb_001195_550--Hb_070498_010 Hb_001195_550--Hb_001159_090 Hb_002639_050 Hb_002639_050 Hb_001195_550--Hb_002639_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.62122 60.9046 302.554 271.611 7.68753 3.62534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0400119 0.0314743 0 28.249 112.63

CAGE analysis