Hb_128196_010

Information

Type -
Description -
Location Contig128196: 3495-5075
Sequence    

Annotation

kegg
ID rcu:RCOM_1437200
description hypothetical protein
nr
ID XP_002512603.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q3E6P4
description F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1
trembl
ID B9RFT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08694: 3409-5069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128196_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_070498_010 0.0712038394 - - receptor kinase, putative [Ricinus communis]
3 Hb_002301_400 0.0751191109 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_001157_050 0.0830359453 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
5 Hb_012404_020 0.0867007627 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001221_060 0.0884532644 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
7 Hb_005568_020 0.0934953485 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
8 Hb_000120_340 0.0981881728 - - Cucumisin precursor, putative [Ricinus communis]
9 Hb_000003_750 0.1004813876 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
10 Hb_000996_070 0.1013045716 - - unnamed protein product [Vitis vinifera]
11 Hb_000418_170 0.1017424214 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
12 Hb_121313_010 0.1018873295 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
13 Hb_005730_110 0.1033714451 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
14 Hb_000627_040 0.1044927609 - - leucine-rich repeat protein, putative [Ricinus communis]
15 Hb_008686_010 0.1045559792 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000032_420 0.105935738 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
17 Hb_028008_040 0.1076924631 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005496_040 0.1103593716 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
19 Hb_003666_070 0.1104308243 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
20 Hb_169893_010 0.1111649079 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]

Gene co-expression network

sample Hb_128196_010 Hb_128196_010 Hb_070498_010 Hb_070498_010 Hb_128196_010--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_128196_010--Hb_002301_400 Hb_001157_050 Hb_001157_050 Hb_128196_010--Hb_001157_050 Hb_012404_020 Hb_012404_020 Hb_128196_010--Hb_012404_020 Hb_001221_060 Hb_001221_060 Hb_128196_010--Hb_001221_060 Hb_005568_020 Hb_005568_020 Hb_128196_010--Hb_005568_020 Hb_070498_010--Hb_002301_400 Hb_000996_030 Hb_000996_030 Hb_070498_010--Hb_000996_030 Hb_070498_010--Hb_012404_020 Hb_011918_070 Hb_011918_070 Hb_070498_010--Hb_011918_070 Hb_000003_750 Hb_000003_750 Hb_070498_010--Hb_000003_750 Hb_002301_400--Hb_012404_020 Hb_001159_090 Hb_001159_090 Hb_002301_400--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002301_400--Hb_006196_030 Hb_001195_550 Hb_001195_550 Hb_002301_400--Hb_001195_550 Hb_015048_020 Hb_015048_020 Hb_001157_050--Hb_015048_020 Hb_007632_160 Hb_007632_160 Hb_001157_050--Hb_007632_160 Hb_001366_290 Hb_001366_290 Hb_001157_050--Hb_001366_290 Hb_001157_050--Hb_000003_750 Hb_000996_070 Hb_000996_070 Hb_001157_050--Hb_000996_070 Hb_005730_110 Hb_005730_110 Hb_012404_020--Hb_005730_110 Hb_012404_020--Hb_001366_290 Hb_028008_040 Hb_028008_040 Hb_012404_020--Hb_028008_040 Hb_001221_060--Hb_002301_400 Hb_000465_020 Hb_000465_020 Hb_001221_060--Hb_000465_020 Hb_001221_060--Hb_070498_010 Hb_001221_060--Hb_005568_020 Hb_008511_040 Hb_008511_040 Hb_001221_060--Hb_008511_040 Hb_000735_060 Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_002078_390 Hb_002078_390 Hb_005568_020--Hb_002078_390 Hb_003606_050 Hb_003606_050 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.33212 9.42588 49.7955 45.7803 1.34096 0.374041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.337695 0.365241 0.369966 6.16227 23.1825

CAGE analysis