Hb_008511_040

Information

Type -
Description -
Location Contig8511: 43307-46606
Sequence    

Annotation

kegg
ID rcu:RCOM_1674960
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002509479.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q9M069
description Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2
trembl
ID B9RBE5
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1674960 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60412: 43316-46600 , PASA_asmbl_60413: 43815-43972 , PASA_asmbl_60414: 44117-44240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008511_040 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_006133_020 0.0728933167 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
3 Hb_000008_200 0.0946235801 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
4 Hb_000069_300 0.1033641829 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_000227_400 0.1076877951 - - lipoxygenase, putative [Ricinus communis]
6 Hb_001922_110 0.1128039951 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001123_310 0.1133050569 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
8 Hb_001862_050 0.1142568165 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
9 Hb_001221_060 0.1167842458 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
10 Hb_002965_160 0.1178856043 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
11 Hb_000207_350 0.1184967793 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
12 Hb_000130_130 0.1186846097 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
13 Hb_001141_050 0.1189180685 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
14 Hb_091318_010 0.1189471493 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
15 Hb_005568_020 0.1195464744 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
16 Hb_012286_060 0.1264208046 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
17 Hb_003020_190 0.1298700645 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
18 Hb_000032_410 0.1314917924 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
19 Hb_000388_080 0.1316267088 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
20 Hb_000958_120 0.1325181531 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]

Gene co-expression network

sample Hb_008511_040 Hb_008511_040 Hb_006133_020 Hb_006133_020 Hb_008511_040--Hb_006133_020 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_000069_300 Hb_000069_300 Hb_008511_040--Hb_000069_300 Hb_000227_400 Hb_000227_400 Hb_008511_040--Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310 Hb_003020_190 Hb_003020_190 Hb_006133_020--Hb_003020_190 Hb_001862_050 Hb_001862_050 Hb_006133_020--Hb_001862_050 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_005568_020 Hb_005568_020 Hb_000008_200--Hb_005568_020 Hb_003606_050 Hb_003606_050 Hb_000008_200--Hb_003606_050 Hb_091318_010 Hb_091318_010 Hb_000008_200--Hb_091318_010 Hb_001268_160 Hb_001268_160 Hb_000008_200--Hb_001268_160 Hb_000735_060 Hb_000735_060 Hb_000008_200--Hb_000735_060 Hb_001541_190 Hb_001541_190 Hb_000069_300--Hb_001541_190 Hb_000069_300--Hb_001862_050 Hb_000069_300--Hb_006133_020 Hb_000069_300--Hb_001141_050 Hb_000069_300--Hb_001922_110 Hb_000227_400--Hb_001922_110 Hb_010868_040 Hb_010868_040 Hb_000227_400--Hb_010868_040 Hb_004855_020 Hb_004855_020 Hb_000227_400--Hb_004855_020 Hb_000207_350 Hb_000207_350 Hb_000227_400--Hb_000207_350 Hb_000958_120 Hb_000958_120 Hb_000227_400--Hb_000958_120 Hb_000243_060 Hb_000243_060 Hb_000227_400--Hb_000243_060 Hb_001922_110--Hb_001141_050 Hb_001922_110--Hb_000958_120 Hb_000792_050 Hb_000792_050 Hb_001922_110--Hb_000792_050 Hb_001922_110--Hb_010868_040 Hb_000120_300 Hb_000120_300 Hb_001123_310--Hb_000120_300 Hb_001123_310--Hb_000207_350 Hb_000483_080 Hb_000483_080 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_001123_310--Hb_006133_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5085 52.7699 229.191 185.075 13.2183 7.25995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4032 5.83557 9.20806 24.3083 98.4366

CAGE analysis