Hb_001862_050

Information

Type -
Description -
Location Contig1862: 50809-52628
Sequence    

Annotation

kegg
ID rcu:RCOM_1155100
description copper ion binding protein, putative
nr
ID XP_012079351.1
description PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
swissprot
ID O22194
description Lysine-rich arabinogalactan protein 17 OS=Arabidopsis thaliana GN=AGP17 PE=2 SV=1
trembl
ID A0A067K7D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12493 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18278: 51391-52304 , PASA_asmbl_18279: 50739-52675
cDNA
(Sanger)
(ID:Location)		 004_E21.ab1: 50732-52185 , 007_B16.ab1: 50752-52164 , 011_H24.ab1: 50732-52185 , 017_D04.ab1: 50752-51447 , 020_G06.ab1: 50752-52256 , 024_G23.ab1: 50739-51350 , 031_H07.ab1: 50728-51381 , 038_P23.ab1: 50752-52161 , 039_G01.ab1: 50739-51447 , 045_A07.ab1: 50748-52202 , 048_F15.ab1: 50730-52186

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_050 0.0 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
2 Hb_002965_160 0.092237288 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
3 Hb_003020_190 0.1029439768 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
4 Hb_004129_060 0.1033136979 - - triacylglycerol lipase, putative [Ricinus communis]
5 Hb_006133_020 0.1100812892 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
6 Hb_000069_300 0.1102857247 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_047659_010 0.1128586685 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008511_040 0.1142568165 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_003667_020 0.1294405373 - - conserved hypothetical protein 16 [Hevea brasiliensis]
10 Hb_000190_220 0.13098484 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
11 Hb_071674_010 0.1329039399 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
12 Hb_001221_060 0.1373555437 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
13 Hb_003992_280 0.1385997926 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
14 Hb_000956_050 0.141349405 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
15 Hb_001755_040 0.1418478379 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
16 Hb_001123_310 0.1425883472 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
17 Hb_018133_070 0.1427223147 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
18 Hb_024714_090 0.1450553792 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
19 Hb_001195_550 0.1474857145 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
20 Hb_003109_010 0.1478234725 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]

Gene co-expression network

sample Hb_001862_050 Hb_001862_050 Hb_002965_160 Hb_002965_160 Hb_001862_050--Hb_002965_160 Hb_003020_190 Hb_003020_190 Hb_001862_050--Hb_003020_190 Hb_004129_060 Hb_004129_060 Hb_001862_050--Hb_004129_060 Hb_006133_020 Hb_006133_020 Hb_001862_050--Hb_006133_020 Hb_000069_300 Hb_000069_300 Hb_001862_050--Hb_000069_300 Hb_047659_010 Hb_047659_010 Hb_001862_050--Hb_047659_010 Hb_001123_310 Hb_001123_310 Hb_002965_160--Hb_001123_310 Hb_008511_040 Hb_008511_040 Hb_002965_160--Hb_008511_040 Hb_002965_160--Hb_006133_020 Hb_006289_020 Hb_006289_020 Hb_002965_160--Hb_006289_020 Hb_001188_050 Hb_001188_050 Hb_002965_160--Hb_001188_050 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_003020_190--Hb_071674_010 Hb_003020_190--Hb_006133_020 Hb_000991_030 Hb_000991_030 Hb_003020_190--Hb_000991_030 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_000936_030 Hb_000936_030 Hb_004129_060--Hb_000936_030 Hb_004129_060--Hb_003020_190 Hb_000190_220 Hb_000190_220 Hb_004129_060--Hb_000190_220 Hb_001755_040 Hb_001755_040 Hb_004129_060--Hb_001755_040 Hb_003109_010 Hb_003109_010 Hb_004129_060--Hb_003109_010 Hb_006133_020--Hb_008511_040 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_001541_190 Hb_001541_190 Hb_000069_300--Hb_001541_190 Hb_000069_300--Hb_008511_040 Hb_000069_300--Hb_006133_020 Hb_000069_300--Hb_001141_050 Hb_001922_110 Hb_001922_110 Hb_000069_300--Hb_001922_110 Hb_047659_010--Hb_000991_030 Hb_169893_010 Hb_169893_010 Hb_047659_010--Hb_169893_010 Hb_047659_010--Hb_003020_190 Hb_047659_010--Hb_006133_020 Hb_008686_010 Hb_008686_010 Hb_047659_010--Hb_008686_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8642 44.6115 315.869 213.076 11.1181 9.43865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.16338 6.04632 3.29449 22.9049 63.6995

CAGE analysis