Hb_047659_010

Information

Type -
Description -
Location Contig47659: 1088-1357
Sequence    

Annotation

kegg
ID rcu:RCOM_0451880
description hypothetical protein
nr
ID XP_002531558.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZY9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0451880 PE=4 SV=1
Gene Ontology
ID GO:0031072
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047659_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000991_030 0.1116026261 - - PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
3 Hb_001862_050 0.1128586685 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
4 Hb_169893_010 0.1147268292 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
5 Hb_003020_190 0.1156257591 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
6 Hb_006133_020 0.1209766261 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
7 Hb_008686_010 0.1237566832 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005496_040 0.1242517944 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
9 Hb_001221_060 0.1249606584 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
10 Hb_000622_170 0.1251834948 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
11 Hb_005890_020 0.1306482907 - - putative plant disease resistance family protein [Populus trichocarpa]
12 Hb_071674_010 0.1320400606 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
13 Hb_004117_090 0.1335239352 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
14 Hb_005977_080 0.1350381334 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
15 Hb_000107_360 0.1358465809 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
16 Hb_018133_070 0.1361368143 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
17 Hb_000072_230 0.1364631547 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
18 Hb_000342_040 0.137641912 - - pollen specific protein sf21, putative [Ricinus communis]
19 Hb_010288_030 0.1404042545 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
20 Hb_008511_040 0.1405180521 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_047659_010 Hb_047659_010 Hb_000991_030 Hb_000991_030 Hb_047659_010--Hb_000991_030 Hb_001862_050 Hb_001862_050 Hb_047659_010--Hb_001862_050 Hb_169893_010 Hb_169893_010 Hb_047659_010--Hb_169893_010 Hb_003020_190 Hb_003020_190 Hb_047659_010--Hb_003020_190 Hb_006133_020 Hb_006133_020 Hb_047659_010--Hb_006133_020 Hb_008686_010 Hb_008686_010 Hb_047659_010--Hb_008686_010 Hb_000991_030--Hb_003020_190 Hb_071674_010 Hb_071674_010 Hb_000991_030--Hb_071674_010 Hb_000622_170 Hb_000622_170 Hb_000991_030--Hb_000622_170 Hb_000991_030--Hb_006133_020 Hb_008511_040 Hb_008511_040 Hb_000991_030--Hb_008511_040 Hb_002965_160 Hb_002965_160 Hb_001862_050--Hb_002965_160 Hb_001862_050--Hb_003020_190 Hb_004129_060 Hb_004129_060 Hb_001862_050--Hb_004129_060 Hb_001862_050--Hb_006133_020 Hb_000069_300 Hb_000069_300 Hb_001862_050--Hb_000069_300 Hb_169893_010--Hb_008686_010 Hb_001195_550 Hb_001195_550 Hb_169893_010--Hb_001195_550 Hb_070498_010 Hb_070498_010 Hb_169893_010--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_169893_010--Hb_002301_400 Hb_003750_120 Hb_003750_120 Hb_169893_010--Hb_003750_120 Hb_128196_010 Hb_128196_010 Hb_169893_010--Hb_128196_010 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_003020_190--Hb_071674_010 Hb_003020_190--Hb_006133_020 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_006133_020--Hb_008511_040 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_005496_040 Hb_005496_040 Hb_008686_010--Hb_005496_040 Hb_008686_010--Hb_001195_550 Hb_008686_010--Hb_070498_010 Hb_000003_750 Hb_000003_750 Hb_008686_010--Hb_000003_750 Hb_143629_120 Hb_143629_120 Hb_008686_010--Hb_143629_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89909 40.2054 313.112 251.185 6.09405 8.36323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4162 7.85077 1.57625 7.88593 100.837

CAGE analysis