Hb_001195_550

Information

Type -
Description -
Location Contig1195: 356569-359200
Sequence    

Annotation

kegg
ID vvi:100245551
description deSI-like protein At4g17486
nr
ID XP_012071797.1
description PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID A0A067L2Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04399 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05851: 356669-359475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_550 0.0 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
2 Hb_169893_010 0.0870063697 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
3 Hb_008686_010 0.089896645 - - conserved hypothetical protein [Ricinus communis]
4 Hb_070498_010 0.08990064 - - receptor kinase, putative [Ricinus communis]
5 Hb_002301_400 0.0925911825 - - structural constituent of cell wall, putative [Ricinus communis]
6 Hb_001159_090 0.0955343693 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
7 Hb_002639_050 0.0964281954 - - multicopper oxidase, putative [Ricinus communis]
8 Hb_003055_080 0.1098304567 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
9 Hb_143629_120 0.1128580417 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_000375_260 0.1137721256 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
11 Hb_128196_010 0.1143830285 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003750_120 0.1156213775 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
13 Hb_006196_030 0.1162516502 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
14 Hb_000996_040 0.1169349805 - - hypothetical protein POPTR_0003s12500g [Populus trichocarpa]
15 Hb_000300_190 0.1190148442 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
16 Hb_012404_020 0.1218078325 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003029_120 0.1229662894 - - PREDICTED: uncharacterized protein LOC105642638 [Jatropha curcas]
18 Hb_003935_040 0.1239418176 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
19 Hb_003606_050 0.1249793993 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
20 Hb_000003_750 0.1253892933 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_550 Hb_001195_550 Hb_169893_010 Hb_169893_010 Hb_001195_550--Hb_169893_010 Hb_008686_010 Hb_008686_010 Hb_001195_550--Hb_008686_010 Hb_070498_010 Hb_070498_010 Hb_001195_550--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_001195_550--Hb_002301_400 Hb_001159_090 Hb_001159_090 Hb_001195_550--Hb_001159_090 Hb_002639_050 Hb_002639_050 Hb_001195_550--Hb_002639_050 Hb_169893_010--Hb_008686_010 Hb_169893_010--Hb_070498_010 Hb_169893_010--Hb_002301_400 Hb_003750_120 Hb_003750_120 Hb_169893_010--Hb_003750_120 Hb_128196_010 Hb_128196_010 Hb_169893_010--Hb_128196_010 Hb_005496_040 Hb_005496_040 Hb_008686_010--Hb_005496_040 Hb_008686_010--Hb_070498_010 Hb_000003_750 Hb_000003_750 Hb_008686_010--Hb_000003_750 Hb_143629_120 Hb_143629_120 Hb_008686_010--Hb_143629_120 Hb_070498_010--Hb_128196_010 Hb_070498_010--Hb_002301_400 Hb_000996_030 Hb_000996_030 Hb_070498_010--Hb_000996_030 Hb_012404_020 Hb_012404_020 Hb_070498_010--Hb_012404_020 Hb_011918_070 Hb_011918_070 Hb_070498_010--Hb_011918_070 Hb_070498_010--Hb_000003_750 Hb_002301_400--Hb_128196_010 Hb_002301_400--Hb_012404_020 Hb_002301_400--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002301_400--Hb_006196_030 Hb_000375_260 Hb_000375_260 Hb_001159_090--Hb_000375_260 Hb_001157_050 Hb_001157_050 Hb_001159_090--Hb_001157_050 Hb_001159_090--Hb_006196_030 Hb_001159_090--Hb_003750_120 Hb_000359_100 Hb_000359_100 Hb_001159_090--Hb_000359_100 Hb_001054_040 Hb_001054_040 Hb_002639_050--Hb_001054_040 Hb_002639_050--Hb_002301_400 Hb_002639_050--Hb_001159_090 Hb_002639_050--Hb_006196_030 Hb_000300_190 Hb_000300_190 Hb_002639_050--Hb_000300_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.552275 4.89215 20.8457 22.8682 0.304483 0.786389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0666026 0.209481 0 2.90306 6.41905

CAGE analysis