Hb_000359_100

Information

Type -
Description -
Location Contig359: 124383-130915
Sequence    

Annotation

kegg
ID rcu:RCOM_0324250
description hypothetical protein
nr
ID XP_002530206.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4IDQ5
description Protein JASON OS=Arabidopsis thaliana GN=JASON PE=2 SV=1
trembl
ID B9SW37
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0324250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37042: 124411-130786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002203_010 0.0730528394 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
3 Hb_002028_270 0.0822237863 - - Pectinesterase-1 precursor, putative [Ricinus communis]
4 Hb_004005_060 0.0859221991 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
5 Hb_002818_060 0.0915133431 - - zinc finger protein, putative [Ricinus communis]
6 Hb_001007_020 0.0918607443 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
7 Hb_001159_090 0.0949526341 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
8 Hb_003750_120 0.0956799409 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
9 Hb_002894_060 0.0967879567 - - respiratory burst oxidase D [Manihot esculenta]
10 Hb_000878_080 0.0982064549 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
11 Hb_001971_040 0.098549929 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
12 Hb_005276_190 0.099323147 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
13 Hb_000418_110 0.100241132 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
14 Hb_001349_050 0.1004653812 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
15 Hb_006810_040 0.1009186391 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_001709_090 0.1016062764 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
17 Hb_006693_010 0.1017820488 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
18 Hb_001157_050 0.1030924763 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
19 Hb_001348_100 0.1034799249 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]
20 Hb_000213_020 0.1043423242 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000359_100 Hb_000359_100 Hb_002203_010 Hb_002203_010 Hb_000359_100--Hb_002203_010 Hb_002028_270 Hb_002028_270 Hb_000359_100--Hb_002028_270 Hb_004005_060 Hb_004005_060 Hb_000359_100--Hb_004005_060 Hb_002818_060 Hb_002818_060 Hb_000359_100--Hb_002818_060 Hb_001007_020 Hb_001007_020 Hb_000359_100--Hb_001007_020 Hb_001159_090 Hb_001159_090 Hb_000359_100--Hb_001159_090 Hb_000213_020 Hb_000213_020 Hb_002203_010--Hb_000213_020 Hb_001349_050 Hb_001349_050 Hb_002203_010--Hb_001349_050 Hb_002203_010--Hb_004005_060 Hb_002203_010--Hb_002818_060 Hb_000878_080 Hb_000878_080 Hb_002203_010--Hb_000878_080 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_002028_270--Hb_006810_040 Hb_002028_270--Hb_000878_080 Hb_002028_270--Hb_004005_060 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020 Hb_004005_060--Hb_000213_020 Hb_000862_050 Hb_000862_050 Hb_004005_060--Hb_000862_050 Hb_004005_060--Hb_000878_080 Hb_002818_060--Hb_001349_050 Hb_001623_250 Hb_001623_250 Hb_002818_060--Hb_001623_250 Hb_002894_060 Hb_002894_060 Hb_002818_060--Hb_002894_060 Hb_000363_390 Hb_000363_390 Hb_002818_060--Hb_000363_390 Hb_000418_110 Hb_000418_110 Hb_001007_020--Hb_000418_110 Hb_001007_020--Hb_002894_060 Hb_000134_130 Hb_000134_130 Hb_001007_020--Hb_000134_130 Hb_174639_010 Hb_174639_010 Hb_001007_020--Hb_174639_010 Hb_003894_110 Hb_003894_110 Hb_001007_020--Hb_003894_110 Hb_001007_020--Hb_001349_050 Hb_000375_260 Hb_000375_260 Hb_001159_090--Hb_000375_260 Hb_002301_400 Hb_002301_400 Hb_001159_090--Hb_002301_400 Hb_001157_050 Hb_001157_050 Hb_001159_090--Hb_001157_050 Hb_006196_030 Hb_006196_030 Hb_001159_090--Hb_006196_030 Hb_003750_120 Hb_003750_120 Hb_001159_090--Hb_003750_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.696973 7.35958 7.19571 0.00881945 0.0262679
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0214049 0 0.0319783 0.689856 1.63956

CAGE analysis