Hb_001623_250

Information

Type -
Description -
Location Contig1623: 145814-150248
Sequence    

Annotation

kegg
ID pop:POPTR_0001s14240g
description POPTRDRAFT_547984; pectate lyase family protein
nr
ID XP_012077669.1
description PREDICTED: probable pectate lyase 8 [Jatropha curcas]
swissprot
ID Q944R1
description Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1
trembl
ID A0A067KM66
description Pectate lyase OS=Jatropha curcas GN=JCGZ_12924 PE=3 SV=1
Gene Ontology
ID GO:0030570
description probable pectate lyase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14696: 145764-150260 , PASA_asmbl_14697: 147590-150245 , PASA_asmbl_14698: 149743-149941
cDNA
(Sanger)
(ID:Location)		 020_I24.ab1: 147107-150260 , 033_K12.ab1: 147182-150255 , 038_P12.ab1: 147155-150255 , 051_H04.ab1: 147292-150260

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_250 0.0 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
2 Hb_003006_070 0.0490282565 - - aquaporin [Manihot esculenta]
3 Hb_001349_050 0.060606888 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
4 Hb_002836_110 0.0695445897 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
5 Hb_003085_070 0.0829779808 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
6 Hb_002894_060 0.0896715164 - - respiratory burst oxidase D [Manihot esculenta]
7 Hb_002818_060 0.0897341494 - - zinc finger protein, putative [Ricinus communis]
8 Hb_002053_100 0.0902508697 - - actin binding protein, putative [Ricinus communis]
9 Hb_000375_220 0.0913982025 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
10 Hb_000073_040 0.0916111419 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
11 Hb_004410_020 0.0992617648 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
12 Hb_019516_010 0.1000714243 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
13 Hb_072620_010 0.1010985616 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
14 Hb_001007_020 0.1058924768 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
15 Hb_001958_040 0.1068989282 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
16 Hb_002045_160 0.1070785683 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
17 Hb_002203_010 0.1072395465 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
18 Hb_000671_020 0.1077103395 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
19 Hb_006614_020 0.1078319641 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
20 Hb_004128_150 0.1113599027 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]

Gene co-expression network

sample Hb_001623_250 Hb_001623_250 Hb_003006_070 Hb_003006_070 Hb_001623_250--Hb_003006_070 Hb_001349_050 Hb_001349_050 Hb_001623_250--Hb_001349_050 Hb_002836_110 Hb_002836_110 Hb_001623_250--Hb_002836_110 Hb_003085_070 Hb_003085_070 Hb_001623_250--Hb_003085_070 Hb_002894_060 Hb_002894_060 Hb_001623_250--Hb_002894_060 Hb_002818_060 Hb_002818_060 Hb_001623_250--Hb_002818_060 Hb_003006_070--Hb_003085_070 Hb_000375_220 Hb_000375_220 Hb_003006_070--Hb_000375_220 Hb_003006_070--Hb_002836_110 Hb_006614_020 Hb_006614_020 Hb_003006_070--Hb_006614_020 Hb_003006_070--Hb_001349_050 Hb_001349_050--Hb_002894_060 Hb_001349_050--Hb_002818_060 Hb_019516_010 Hb_019516_010 Hb_001349_050--Hb_019516_010 Hb_002053_100 Hb_002053_100 Hb_001349_050--Hb_002053_100 Hb_009113_020 Hb_009113_020 Hb_002836_110--Hb_009113_020 Hb_002836_110--Hb_001349_050 Hb_002836_110--Hb_003085_070 Hb_000538_290 Hb_000538_290 Hb_002836_110--Hb_000538_290 Hb_003185_040 Hb_003185_040 Hb_003085_070--Hb_003185_040 Hb_003085_070--Hb_006614_020 Hb_003085_070--Hb_000375_220 Hb_001007_020 Hb_001007_020 Hb_002894_060--Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_002894_060--Hb_000418_110 Hb_002894_060--Hb_019516_010 Hb_000134_130 Hb_000134_130 Hb_002894_060--Hb_000134_130 Hb_002203_010 Hb_002203_010 Hb_002818_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_002818_060--Hb_000359_100 Hb_002818_060--Hb_002894_060 Hb_000363_390 Hb_000363_390 Hb_002818_060--Hb_000363_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12816 1.41418 96.8708 73.4006 0.101283 0.18013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.103737 0 0.0385544 3.41392 19.2858

CAGE analysis