Hb_009113_020

Information

Type -
Description -
Location Contig9113: 18861-21236
Sequence    

Annotation

kegg
ID rcu:RCOM_0528500
description Polygalacturonase-1 non-catalytic subunit beta precursor, putative
nr
ID XP_012085373.1
description PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
swissprot
ID P92990
description Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2
trembl
ID A0A067JRJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17739 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62141: 18844-21473
cDNA
(Sanger)
(ID:Location)		 010_N06.ab1: 18845-19694 , 031_B18.ab1: 19463-19903 , 041_O08.ab1: 19463-19812 , 046_J02.ab1: 18844-19837

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009113_020 0.0 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
2 Hb_002686_320 0.0587166103 - - syntaxin, putative [Ricinus communis]
3 Hb_002836_110 0.0643843249 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
4 Hb_000538_290 0.0733840141 - - hypothetical protein RCOM_0303940 [Ricinus communis]
5 Hb_009545_060 0.0737855022 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
6 Hb_001856_210 0.0912863415 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
7 Hb_005398_050 0.0947804697 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
8 Hb_000977_190 0.0949987579 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000187_050 0.0959559435 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
10 Hb_010080_050 0.0965926035 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
11 Hb_001971_040 0.0972877351 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
12 Hb_000701_020 0.0979493781 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
13 Hb_089140_070 0.1043370916 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
14 Hb_000035_230 0.1052621385 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
15 Hb_006810_040 0.1052706275 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
16 Hb_000671_020 0.1087776498 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
17 Hb_006198_100 0.1102760673 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
18 Hb_001623_250 0.1124296894 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
19 Hb_000445_260 0.1134118952 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
20 Hb_003185_040 0.1207814862 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]

Gene co-expression network

sample Hb_009113_020 Hb_009113_020 Hb_002686_320 Hb_002686_320 Hb_009113_020--Hb_002686_320 Hb_002836_110 Hb_002836_110 Hb_009113_020--Hb_002836_110 Hb_000538_290 Hb_000538_290 Hb_009113_020--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_009113_020--Hb_009545_060 Hb_001856_210 Hb_001856_210 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050 Hb_000977_190 Hb_000977_190 Hb_002686_320--Hb_000977_190 Hb_002686_320--Hb_000538_290 Hb_002686_320--Hb_009545_060 Hb_000701_020 Hb_000701_020 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100 Hb_001623_250 Hb_001623_250 Hb_002836_110--Hb_001623_250 Hb_003006_070 Hb_003006_070 Hb_002836_110--Hb_003006_070 Hb_001349_050 Hb_001349_050 Hb_002836_110--Hb_001349_050 Hb_003085_070 Hb_003085_070 Hb_002836_110--Hb_003085_070 Hb_002836_110--Hb_000538_290 Hb_006810_040 Hb_006810_040 Hb_000538_290--Hb_006810_040 Hb_000538_290--Hb_000701_020 Hb_000538_290--Hb_000977_190 Hb_000187_050 Hb_000187_050 Hb_000538_290--Hb_000187_050 Hb_000962_060 Hb_000962_060 Hb_009545_060--Hb_000962_060 Hb_000035_230 Hb_000035_230 Hb_009545_060--Hb_000035_230 Hb_009545_060--Hb_000701_020 Hb_009545_060--Hb_000538_290 Hb_000445_260 Hb_000445_260 Hb_001856_210--Hb_000445_260 Hb_174639_010 Hb_174639_010 Hb_001856_210--Hb_174639_010 Hb_010080_050 Hb_010080_050 Hb_001856_210--Hb_010080_050 Hb_000878_080 Hb_000878_080 Hb_001856_210--Hb_000878_080 Hb_004880_040 Hb_004880_040 Hb_001856_210--Hb_004880_040 Hb_003847_060 Hb_003847_060 Hb_005398_050--Hb_003847_060 Hb_000527_020 Hb_000527_020 Hb_005398_050--Hb_000527_020 Hb_078448_010 Hb_078448_010 Hb_005398_050--Hb_078448_010 Hb_005398_050--Hb_000035_230 Hb_001307_150 Hb_001307_150 Hb_005398_050--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_005398_050--Hb_016898_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.251279 20.1981 21.0871 0.0670555 0.0091654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.73456 2.53263

CAGE analysis