Hb_009545_060

Information

Type -
Description -
Location Contig9545: 47289-48599
Sequence    

Annotation

kegg
ID rcu:RCOM_0911860
description hypothetical protein
nr
ID XP_012069654.1
description PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02189 PE=4 SV=1
Gene Ontology
ID GO:0006869
description c-8 sterol

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63498: 47271-47435 , PASA_asmbl_63499: 47439-48622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009545_060 0.0 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
2 Hb_009113_020 0.0737855022 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
3 Hb_002686_320 0.0786349934 - - syntaxin, putative [Ricinus communis]
4 Hb_000962_060 0.087900352 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
5 Hb_000035_230 0.0932352463 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
6 Hb_000701_020 0.1020159963 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
7 Hb_000538_290 0.1082709467 - - hypothetical protein RCOM_0303940 [Ricinus communis]
8 Hb_000977_190 0.1089653258 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000089_090 0.108980682 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
10 Hb_000671_020 0.111317644 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
11 Hb_005398_050 0.1124382386 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
12 Hb_006588_100 0.1161898955 - - conserved hypothetical protein [Ricinus communis]
13 Hb_089140_070 0.117491969 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
14 Hb_002836_110 0.1217990816 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
15 Hb_012092_040 0.1223673501 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
16 Hb_001247_060 0.1240955544 - - zinc finger protein, putative [Ricinus communis]
17 Hb_003847_060 0.1257917441 - - syntaxin, putative [Ricinus communis]
18 Hb_001856_210 0.1277996399 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
19 Hb_003680_180 0.1343466451 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_010080_050 0.1359105566 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]

Gene co-expression network

sample Hb_009545_060 Hb_009545_060 Hb_009113_020 Hb_009113_020 Hb_009545_060--Hb_009113_020 Hb_002686_320 Hb_002686_320 Hb_009545_060--Hb_002686_320 Hb_000962_060 Hb_000962_060 Hb_009545_060--Hb_000962_060 Hb_000035_230 Hb_000035_230 Hb_009545_060--Hb_000035_230 Hb_000701_020 Hb_000701_020 Hb_009545_060--Hb_000701_020 Hb_000538_290 Hb_000538_290 Hb_009545_060--Hb_000538_290 Hb_009113_020--Hb_002686_320 Hb_002836_110 Hb_002836_110 Hb_009113_020--Hb_002836_110 Hb_009113_020--Hb_000538_290 Hb_001856_210 Hb_001856_210 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050 Hb_000977_190 Hb_000977_190 Hb_002686_320--Hb_000977_190 Hb_002686_320--Hb_000538_290 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100 Hb_001052_020 Hb_001052_020 Hb_000962_060--Hb_001052_020 Hb_000062_280 Hb_000062_280 Hb_000962_060--Hb_000062_280 Hb_000089_090 Hb_000089_090 Hb_000962_060--Hb_000089_090 Hb_012092_040 Hb_012092_040 Hb_000962_060--Hb_012092_040 Hb_001247_060 Hb_001247_060 Hb_000962_060--Hb_001247_060 Hb_000035_230--Hb_001247_060 Hb_000035_230--Hb_000089_090 Hb_003847_060 Hb_003847_060 Hb_000035_230--Hb_003847_060 Hb_000035_230--Hb_012092_040 Hb_000035_230--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000035_230--Hb_128392_010 Hb_000345_450 Hb_000345_450 Hb_000701_020--Hb_000345_450 Hb_000701_020--Hb_000538_290 Hb_000701_020--Hb_006588_100 Hb_000701_020--Hb_000977_190 Hb_000671_020 Hb_000671_020 Hb_000701_020--Hb_000671_020 Hb_006810_040 Hb_006810_040 Hb_000538_290--Hb_006810_040 Hb_000538_290--Hb_000977_190 Hb_000187_050 Hb_000187_050 Hb_000538_290--Hb_000187_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 4.67931 5.05087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.468879 0.375131

CAGE analysis