Hb_000671_020

Information

Type -
Description -
Location Contig671: 25520-28909
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09830g
description POPTRDRAFT_410416; hypothetical protein
nr
ID XP_012067888.1
description PREDICTED: RNA-binding protein 38 [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID A0A067LBA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15801 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_020 0.0 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
2 Hb_000261_550 0.0873665351 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
3 Hb_072620_010 0.0884544004 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
4 Hb_012395_040 0.0884913872 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000116_050 0.0903527701 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
6 Hb_034420_010 0.0917531698 - - glutathione S-transferase [Caragana korshinskii]
7 Hb_009113_060 0.093329693 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000701_020 0.0965020172 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
9 Hb_002836_110 0.1051210135 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
10 Hb_001623_250 0.1077103395 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
11 Hb_000538_290 0.1087572023 - - hypothetical protein RCOM_0303940 [Ricinus communis]
12 Hb_009113_020 0.1087776498 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
13 Hb_001257_070 0.109251847 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
14 Hb_002686_320 0.1099999929 - - syntaxin, putative [Ricinus communis]
15 Hb_000480_060 0.1110796272 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_005398_050 0.1111365965 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
17 Hb_009545_060 0.111317644 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
18 Hb_005116_120 0.1132855985 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
19 Hb_000345_450 0.1133483833 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
20 Hb_001279_110 0.1147291463 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000671_020 Hb_000671_020 Hb_000261_550 Hb_000261_550 Hb_000671_020--Hb_000261_550 Hb_072620_010 Hb_072620_010 Hb_000671_020--Hb_072620_010 Hb_012395_040 Hb_012395_040 Hb_000671_020--Hb_012395_040 Hb_000116_050 Hb_000116_050 Hb_000671_020--Hb_000116_050 Hb_034420_010 Hb_034420_010 Hb_000671_020--Hb_034420_010 Hb_009113_060 Hb_009113_060 Hb_000671_020--Hb_009113_060 Hb_003902_070 Hb_003902_070 Hb_000261_550--Hb_003902_070 Hb_005116_120 Hb_005116_120 Hb_000261_550--Hb_005116_120 Hb_000701_020 Hb_000701_020 Hb_000261_550--Hb_000701_020 Hb_004592_030 Hb_004592_030 Hb_000261_550--Hb_004592_030 Hb_002757_010 Hb_002757_010 Hb_000261_550--Hb_002757_010 Hb_000073_040 Hb_000073_040 Hb_072620_010--Hb_000073_040 Hb_000258_400 Hb_000258_400 Hb_072620_010--Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_072620_010--Hb_072952_010 Hb_001257_070 Hb_001257_070 Hb_072620_010--Hb_001257_070 Hb_002045_160 Hb_002045_160 Hb_072620_010--Hb_002045_160 Hb_012395_040--Hb_000116_050 Hb_001279_110 Hb_001279_110 Hb_012395_040--Hb_001279_110 Hb_005618_070 Hb_005618_070 Hb_012395_040--Hb_005618_070 Hb_012395_040--Hb_001257_070 Hb_000060_030 Hb_000060_030 Hb_012395_040--Hb_000060_030 Hb_005288_090 Hb_005288_090 Hb_012395_040--Hb_005288_090 Hb_000116_050--Hb_000060_030 Hb_000116_050--Hb_001279_110 Hb_000116_050--Hb_009113_060 Hb_001998_180 Hb_001998_180 Hb_000116_050--Hb_001998_180 Hb_002928_150 Hb_002928_150 Hb_000116_050--Hb_002928_150 Hb_034420_010--Hb_001257_070 Hb_000134_300 Hb_000134_300 Hb_034420_010--Hb_000134_300 Hb_034420_010--Hb_012395_040 Hb_000802_070 Hb_000802_070 Hb_034420_010--Hb_000802_070 Hb_000394_120 Hb_000394_120 Hb_034420_010--Hb_000394_120 Hb_009113_060--Hb_012395_040 Hb_016898_020 Hb_016898_020 Hb_009113_060--Hb_016898_020 Hb_009113_060--Hb_001279_110 Hb_000480_060 Hb_000480_060 Hb_009113_060--Hb_000480_060 Hb_009113_060--Hb_000060_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.912055 0.606767 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0630419 0.10444

CAGE analysis