Hb_000394_120

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig394: 115159-115935
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11330g
description hypothetical protein
nr
ID XP_011001095.1
description PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
swissprot
ID Q9SB61
description Zinc-finger homeodomain protein 2 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1
trembl
ID U5FSR8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11330g PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000394_120 0.0 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
2 Hb_000675_130 0.0477273262 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
3 Hb_001123_180 0.0764975997 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_003641_040 0.0825152991 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
5 Hb_056196_020 0.0918688812 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
6 Hb_034420_010 0.0931626909 - - glutathione S-transferase [Caragana korshinskii]
7 Hb_008226_050 0.0958632466 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
8 Hb_002110_070 0.096099702 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
9 Hb_001969_030 0.0965669495 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000045_040 0.0980282831 - - anthranilate synthase component I, putative [Ricinus communis]
11 Hb_000732_090 0.101358444 - - cyclin d, putative [Ricinus communis]
12 Hb_004097_030 0.1057112936 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
13 Hb_002205_220 0.1063362197 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
14 Hb_000853_020 0.1077774549 - - PREDICTED: endoglucanase 17 [Populus euphratica]
15 Hb_001257_070 0.1081590128 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
16 Hb_005914_100 0.1082309709 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000134_300 0.1103939862 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_004241_160 0.1155666018 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
19 Hb_000175_160 0.1157587088 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
20 Hb_000802_070 0.1186684937 - - PREDICTED: LOW QUALITY PROTEIN: eugenol synthase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000394_120 Hb_000394_120 Hb_000675_130 Hb_000675_130 Hb_000394_120--Hb_000675_130 Hb_001123_180 Hb_001123_180 Hb_000394_120--Hb_001123_180 Hb_003641_040 Hb_003641_040 Hb_000394_120--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_000394_120--Hb_056196_020 Hb_034420_010 Hb_034420_010 Hb_000394_120--Hb_034420_010 Hb_008226_050 Hb_008226_050 Hb_000394_120--Hb_008226_050 Hb_000675_130--Hb_003641_040 Hb_000675_130--Hb_008226_050 Hb_002205_220 Hb_002205_220 Hb_000675_130--Hb_002205_220 Hb_000675_130--Hb_001123_180 Hb_000193_170 Hb_000193_170 Hb_000675_130--Hb_000193_170 Hb_000853_020 Hb_000853_020 Hb_001123_180--Hb_000853_020 Hb_001969_030 Hb_001969_030 Hb_001123_180--Hb_001969_030 Hb_001123_180--Hb_003641_040 Hb_000175_160 Hb_000175_160 Hb_001123_180--Hb_000175_160 Hb_003641_040--Hb_001969_030 Hb_003641_040--Hb_008226_050 Hb_003641_040--Hb_000853_020 Hb_004097_030 Hb_004097_030 Hb_056196_020--Hb_004097_030 Hb_005914_100 Hb_005914_100 Hb_056196_020--Hb_005914_100 Hb_002837_120 Hb_002837_120 Hb_056196_020--Hb_002837_120 Hb_004174_030 Hb_004174_030 Hb_056196_020--Hb_004174_030 Hb_056196_020--Hb_001969_030 Hb_003018_210 Hb_003018_210 Hb_056196_020--Hb_003018_210 Hb_001257_070 Hb_001257_070 Hb_034420_010--Hb_001257_070 Hb_000134_300 Hb_000134_300 Hb_034420_010--Hb_000134_300 Hb_012395_040 Hb_012395_040 Hb_034420_010--Hb_012395_040 Hb_000802_070 Hb_000802_070 Hb_034420_010--Hb_000802_070 Hb_000671_020 Hb_000671_020 Hb_034420_010--Hb_000671_020 Hb_008226_050--Hb_002205_220 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0304716 0 18.1863 7.26942 0 0.112439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.08941 0.772874

CAGE analysis