Hb_001123_180

Information

Type -
Description -
Location Contig1123: 138487-139918
Sequence    

Annotation

kegg
ID rcu:RCOM_1437630
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002512635.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q94AG2
description Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2
trembl
ID B9RFW6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1437630 PE=4 SV=1
Gene Ontology
ID GO:0005515
description somatic embryogenesis receptor kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_180 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000394_120 0.0764975997 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
3 Hb_000853_020 0.0824354707 - - PREDICTED: endoglucanase 17 [Populus euphratica]
4 Hb_000675_130 0.0832821811 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
5 Hb_001969_030 0.0837805088 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003641_040 0.0848135508 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
7 Hb_000175_160 0.0926688886 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
8 Hb_022092_100 0.0929589001 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000045_040 0.0957793767 - - anthranilate synthase component I, putative [Ricinus communis]
10 Hb_056196_020 0.0979629694 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
11 Hb_009838_170 0.104711367 - - Arylacetamide deacetylase, putative [Ricinus communis]
12 Hb_002837_120 0.1096727634 - - PREDICTED: legumin A-like [Jatropha curcas]
13 Hb_156853_010 0.1143949165 - - PREDICTED: vinorine synthase-like [Populus euphratica]
14 Hb_004126_020 0.1159738019 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
15 Hb_001268_270 0.1159784632 - - protein binding protein, putative [Ricinus communis]
16 Hb_000691_040 0.1159867934 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
17 Hb_046615_050 0.1160100389 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
18 Hb_000732_090 0.1160524178 - - cyclin d, putative [Ricinus communis]
19 Hb_007552_030 0.1161395734 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
20 Hb_012143_010 0.1161530702 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera]

Gene co-expression network

sample Hb_001123_180 Hb_001123_180 Hb_000394_120 Hb_000394_120 Hb_001123_180--Hb_000394_120 Hb_000853_020 Hb_000853_020 Hb_001123_180--Hb_000853_020 Hb_000675_130 Hb_000675_130 Hb_001123_180--Hb_000675_130 Hb_001969_030 Hb_001969_030 Hb_001123_180--Hb_001969_030 Hb_003641_040 Hb_003641_040 Hb_001123_180--Hb_003641_040 Hb_000175_160 Hb_000175_160 Hb_001123_180--Hb_000175_160 Hb_000394_120--Hb_000675_130 Hb_000394_120--Hb_003641_040 Hb_056196_020 Hb_056196_020 Hb_000394_120--Hb_056196_020 Hb_034420_010 Hb_034420_010 Hb_000394_120--Hb_034420_010 Hb_008226_050 Hb_008226_050 Hb_000394_120--Hb_008226_050 Hb_000853_020--Hb_000175_160 Hb_022092_100 Hb_022092_100 Hb_000853_020--Hb_022092_100 Hb_000853_020--Hb_001969_030 Hb_000691_060 Hb_000691_060 Hb_000853_020--Hb_000691_060 Hb_000334_100 Hb_000334_100 Hb_000853_020--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000853_020--Hb_000008_100 Hb_000675_130--Hb_003641_040 Hb_000675_130--Hb_008226_050 Hb_002205_220 Hb_002205_220 Hb_000675_130--Hb_002205_220 Hb_000193_170 Hb_000193_170 Hb_000675_130--Hb_000193_170 Hb_002837_120 Hb_002837_120 Hb_001969_030--Hb_002837_120 Hb_001969_030--Hb_000175_160 Hb_001969_030--Hb_022092_100 Hb_001969_030--Hb_003641_040 Hb_001969_030--Hb_056196_020 Hb_003641_040--Hb_008226_050 Hb_003641_040--Hb_000853_020 Hb_000175_160--Hb_022092_100 Hb_000175_160--Hb_000691_060 Hb_004117_240 Hb_004117_240 Hb_000175_160--Hb_004117_240 Hb_000307_080 Hb_000307_080 Hb_000175_160--Hb_000307_080 Hb_000173_070 Hb_000173_070 Hb_000175_160--Hb_000173_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140657 0 25.6383 8.88253 0.047208 0.0837102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109089 0 0 0.0705394 0.493426

CAGE analysis