Hb_000130_400

Information

Type transcription factor
Description TF Family: bZIP
Location Contig130: 349302-351159
Sequence    

Annotation

kegg
ID pop:POPTR_0001s38320g
description POPTRDRAFT_839017; hypothetical protein
nr
ID XP_002298901.1
description hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
swissprot
ID Q9M2K4
description Basic leucine zipper 61 OS=Arabidopsis thaliana GN=BZIP61 PE=1 SV=1
trembl
ID B9GGF1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s38320g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08937: 349984-351051 , PASA_asmbl_08938: 350347-351051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_400 0.0 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
2 Hb_000375_200 0.0572482228 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
3 Hb_059832_010 0.0663692476 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
4 Hb_000496_100 0.0685296167 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
5 Hb_000193_170 0.0687778004 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
6 Hb_028486_020 0.0698676738 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000187_020 0.0752947813 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
8 Hb_000010_430 0.0765634866 - - Esterase precursor, putative [Ricinus communis]
9 Hb_000375_100 0.0784475005 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
10 Hb_018663_010 0.0814863013 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
11 Hb_010737_030 0.0823043116 - - unnamed protein product [Vitis vinifera]
12 Hb_008226_050 0.0836201396 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
13 Hb_002205_220 0.0870710243 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
14 Hb_000051_130 0.0875384437 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_072952_010 0.0880924769 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
16 Hb_000675_130 0.092645248 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
17 Hb_061336_010 0.0948519042 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000445_320 0.1005022406 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
19 Hb_000732_090 0.1014287487 - - cyclin d, putative [Ricinus communis]
20 Hb_003464_040 0.1024679306 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000130_400 Hb_000130_400 Hb_000375_200 Hb_000375_200 Hb_000130_400--Hb_000375_200 Hb_059832_010 Hb_059832_010 Hb_000130_400--Hb_059832_010 Hb_000496_100 Hb_000496_100 Hb_000130_400--Hb_000496_100 Hb_000193_170 Hb_000193_170 Hb_000130_400--Hb_000193_170 Hb_028486_020 Hb_028486_020 Hb_000130_400--Hb_028486_020 Hb_000187_020 Hb_000187_020 Hb_000130_400--Hb_000187_020 Hb_000375_200--Hb_000193_170 Hb_018663_010 Hb_018663_010 Hb_000375_200--Hb_018663_010 Hb_003464_040 Hb_003464_040 Hb_000375_200--Hb_003464_040 Hb_000375_200--Hb_000187_020 Hb_012368_040 Hb_012368_040 Hb_000375_200--Hb_012368_040 Hb_059832_010--Hb_000187_020 Hb_000010_320 Hb_000010_320 Hb_059832_010--Hb_000010_320 Hb_059832_010--Hb_000375_200 Hb_158845_010 Hb_158845_010 Hb_059832_010--Hb_158845_010 Hb_000445_320 Hb_000445_320 Hb_059832_010--Hb_000445_320 Hb_010737_030 Hb_010737_030 Hb_000496_100--Hb_010737_030 Hb_000496_100--Hb_028486_020 Hb_000496_100--Hb_018663_010 Hb_102900_010 Hb_102900_010 Hb_000496_100--Hb_102900_010 Hb_008165_010 Hb_008165_010 Hb_000496_100--Hb_008165_010 Hb_000193_170--Hb_003464_040 Hb_000193_170--Hb_012368_040 Hb_000193_170--Hb_000187_020 Hb_000193_170--Hb_018663_010 Hb_061336_010 Hb_061336_010 Hb_028486_020--Hb_061336_010 Hb_000816_180 Hb_000816_180 Hb_028486_020--Hb_000816_180 Hb_072952_010 Hb_072952_010 Hb_028486_020--Hb_072952_010 Hb_000375_100 Hb_000375_100 Hb_028486_020--Hb_000375_100 Hb_007576_090 Hb_007576_090 Hb_028486_020--Hb_007576_090 Hb_000187_020--Hb_000445_320 Hb_000051_130 Hb_000051_130 Hb_000187_020--Hb_000051_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 7.08292 2.30245 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0155737 0.87335

CAGE analysis