Hb_059832_010

Information

Type -
Description -
Location Contig59832: 1462-2735
Sequence    

Annotation

kegg
ID rcu:RCOM_1012900
description glutamate receptor 2 plant, putative
nr
ID XP_012091712.1
description PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID A0A067JB61
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_21517 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059832_010 0.0 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
2 Hb_000187_020 0.0649575747 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
3 Hb_000130_400 0.0663692476 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
4 Hb_000010_320 0.0671266952 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
5 Hb_000375_200 0.0764639122 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
6 Hb_158845_010 0.0790505915 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
7 Hb_000445_320 0.0799748591 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
8 Hb_008226_050 0.0839337105 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
9 Hb_000051_130 0.0852820344 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_000496_100 0.0857457681 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
11 Hb_010737_030 0.0875962551 - - unnamed protein product [Vitis vinifera]
12 Hb_028486_020 0.0891978069 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000193_170 0.0920096524 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
14 Hb_015299_040 0.0921641246 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
15 Hb_000397_060 0.0937541477 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
16 Hb_074240_030 0.0950638269 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
17 Hb_018663_010 0.0958361243 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
18 Hb_004003_020 0.0968238822 - - unnamed protein product [Coffea canephora]
19 Hb_052530_010 0.1018782343 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
20 Hb_002205_220 0.1023661707 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]

Gene co-expression network

sample Hb_059832_010 Hb_059832_010 Hb_000187_020 Hb_000187_020 Hb_059832_010--Hb_000187_020 Hb_000130_400 Hb_000130_400 Hb_059832_010--Hb_000130_400 Hb_000010_320 Hb_000010_320 Hb_059832_010--Hb_000010_320 Hb_000375_200 Hb_000375_200 Hb_059832_010--Hb_000375_200 Hb_158845_010 Hb_158845_010 Hb_059832_010--Hb_158845_010 Hb_000445_320 Hb_000445_320 Hb_059832_010--Hb_000445_320 Hb_000187_020--Hb_000445_320 Hb_000187_020--Hb_000375_200 Hb_000193_170 Hb_000193_170 Hb_000187_020--Hb_000193_170 Hb_000187_020--Hb_000130_400 Hb_000051_130 Hb_000051_130 Hb_000187_020--Hb_000051_130 Hb_000130_400--Hb_000375_200 Hb_000496_100 Hb_000496_100 Hb_000130_400--Hb_000496_100 Hb_000130_400--Hb_000193_170 Hb_028486_020 Hb_028486_020 Hb_000130_400--Hb_028486_020 Hb_074240_030 Hb_074240_030 Hb_000010_320--Hb_074240_030 Hb_000010_320--Hb_158845_010 Hb_015299_040 Hb_015299_040 Hb_000010_320--Hb_015299_040 Hb_000397_060 Hb_000397_060 Hb_000010_320--Hb_000397_060 Hb_001856_190 Hb_001856_190 Hb_000010_320--Hb_001856_190 Hb_000375_200--Hb_000193_170 Hb_018663_010 Hb_018663_010 Hb_000375_200--Hb_018663_010 Hb_003464_040 Hb_003464_040 Hb_000375_200--Hb_003464_040 Hb_012368_040 Hb_012368_040 Hb_000375_200--Hb_012368_040 Hb_158845_010--Hb_015299_040 Hb_158845_010--Hb_074240_030 Hb_001357_160 Hb_001357_160 Hb_158845_010--Hb_001357_160 Hb_054615_010 Hb_054615_010 Hb_158845_010--Hb_054615_010 Hb_002453_040 Hb_002453_040 Hb_000445_320--Hb_002453_040 Hb_052530_010 Hb_052530_010 Hb_000445_320--Hb_052530_010 Hb_000445_320--Hb_000193_170 Hb_005918_020 Hb_005918_020 Hb_000445_320--Hb_005918_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.250133 26.9848 8.19333 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.199101 3.82129

CAGE analysis