Hb_001856_190

Information

Type -
Description -
Location Contig1856: 245370-246802
Sequence    

Annotation

kegg
ID rcu:RCOM_0048980
description SP1L, putative
nr
ID XP_002533540.1
description SP1L, putative [Ricinus communis]
swissprot
ID Q9LE54
description Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1
trembl
ID B9T5M1
description SP1L, putative OS=Ricinus communis GN=RCOM_0048980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18170: 245293-246868 , PASA_asmbl_18171: 247623-253132
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_190 0.0 - - SP1L, putative [Ricinus communis]
2 Hb_001386_060 0.0572948954 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
3 Hb_074240_030 0.0649809504 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
4 Hb_003090_020 0.0686888516 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
5 Hb_003592_040 0.082193795 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
6 Hb_000010_320 0.0879595259 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
7 Hb_001357_160 0.0890060122 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002045_160 0.1008240349 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
9 Hb_015299_040 0.1028789281 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
10 Hb_002301_120 0.110599064 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
11 Hb_059832_010 0.1115014957 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
12 Hb_158845_010 0.1116639413 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
13 Hb_000258_400 0.1118548832 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
14 Hb_002243_030 0.1120858173 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
15 Hb_023344_100 0.1155166301 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
16 Hb_000073_040 0.1194728208 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
17 Hb_000397_060 0.1223465258 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
18 Hb_001221_550 0.122635211 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
19 Hb_002893_220 0.1245128188 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
20 Hb_001511_210 0.1249840069 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001856_190 Hb_001856_190 Hb_001386_060 Hb_001386_060 Hb_001856_190--Hb_001386_060 Hb_074240_030 Hb_074240_030 Hb_001856_190--Hb_074240_030 Hb_003090_020 Hb_003090_020 Hb_001856_190--Hb_003090_020 Hb_003592_040 Hb_003592_040 Hb_001856_190--Hb_003592_040 Hb_000010_320 Hb_000010_320 Hb_001856_190--Hb_000010_320 Hb_001357_160 Hb_001357_160 Hb_001856_190--Hb_001357_160 Hb_001386_060--Hb_003592_040 Hb_001386_060--Hb_003090_020 Hb_001386_060--Hb_074240_030 Hb_001439_160 Hb_001439_160 Hb_001386_060--Hb_001439_160 Hb_001221_550 Hb_001221_550 Hb_001386_060--Hb_001221_550 Hb_074240_030--Hb_000010_320 Hb_015299_040 Hb_015299_040 Hb_074240_030--Hb_015299_040 Hb_054615_010 Hb_054615_010 Hb_074240_030--Hb_054615_010 Hb_074240_030--Hb_001357_160 Hb_074240_030--Hb_003090_020 Hb_003090_020--Hb_003592_040 Hb_003090_020--Hb_001357_160 Hb_000362_080 Hb_000362_080 Hb_003090_020--Hb_000362_080 Hb_003592_040--Hb_001221_550 Hb_002893_220 Hb_002893_220 Hb_003592_040--Hb_002893_220 Hb_006586_060 Hb_006586_060 Hb_003592_040--Hb_006586_060 Hb_158845_010 Hb_158845_010 Hb_000010_320--Hb_158845_010 Hb_059832_010 Hb_059832_010 Hb_000010_320--Hb_059832_010 Hb_000010_320--Hb_015299_040 Hb_000397_060 Hb_000397_060 Hb_000010_320--Hb_000397_060 Hb_002243_030 Hb_002243_030 Hb_001357_160--Hb_002243_030 Hb_001357_160--Hb_015299_040 Hb_001357_160--Hb_158845_010 Hb_001357_160--Hb_000010_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.252342 61.9533 19.224 0.220552 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.084594 0 2.12184 15.6051

CAGE analysis