Hb_001386_060

Information

Type -
Description -
Location Contig1386: 104619-106643
Sequence    

Annotation

kegg
ID vvi:100259979
description acetolactate synthase 1, chloroplastic-like
nr
ID XP_002274073.1
description PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
swissprot
ID P09342
description Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1
trembl
ID F6H3X4
description Acetolactate synthase OS=Vitis vinifera GN=VIT_14s0068g01960 PE=3 SV=1
Gene Ontology
ID GO:0009570
description acetolactate synthase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10581: 104703-106772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001386_060 0.0 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
2 Hb_001856_190 0.0572948954 - - SP1L, putative [Ricinus communis]
3 Hb_003592_040 0.0634050554 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
4 Hb_003090_020 0.0748717836 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
5 Hb_074240_030 0.0820652668 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
6 Hb_001439_160 0.1018276902 - - PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]
7 Hb_001221_550 0.1049029115 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
8 Hb_001357_160 0.1068672397 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000010_320 0.1082004093 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
10 Hb_002893_220 0.1093382149 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
11 Hb_000258_400 0.1142279105 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
12 Hb_001511_210 0.1144603225 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
13 Hb_002066_100 0.1149401126 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
14 Hb_003050_140 0.1149701885 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
15 Hb_002045_160 0.1169046182 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
16 Hb_000735_190 0.1171355674 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
17 Hb_000362_080 0.1176461722 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]
18 Hb_001300_190 0.1178829306 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002301_120 0.1185648364 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
20 Hb_006586_060 0.1216197812 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001386_060 Hb_001386_060 Hb_001856_190 Hb_001856_190 Hb_001386_060--Hb_001856_190 Hb_003592_040 Hb_003592_040 Hb_001386_060--Hb_003592_040 Hb_003090_020 Hb_003090_020 Hb_001386_060--Hb_003090_020 Hb_074240_030 Hb_074240_030 Hb_001386_060--Hb_074240_030 Hb_001439_160 Hb_001439_160 Hb_001386_060--Hb_001439_160 Hb_001221_550 Hb_001221_550 Hb_001386_060--Hb_001221_550 Hb_001856_190--Hb_074240_030 Hb_001856_190--Hb_003090_020 Hb_001856_190--Hb_003592_040 Hb_000010_320 Hb_000010_320 Hb_001856_190--Hb_000010_320 Hb_001357_160 Hb_001357_160 Hb_001856_190--Hb_001357_160 Hb_003592_040--Hb_001221_550 Hb_002893_220 Hb_002893_220 Hb_003592_040--Hb_002893_220 Hb_006586_060 Hb_006586_060 Hb_003592_040--Hb_006586_060 Hb_003592_040--Hb_003090_020 Hb_003090_020--Hb_074240_030 Hb_003090_020--Hb_001357_160 Hb_000362_080 Hb_000362_080 Hb_003090_020--Hb_000362_080 Hb_074240_030--Hb_000010_320 Hb_015299_040 Hb_015299_040 Hb_074240_030--Hb_015299_040 Hb_054615_010 Hb_054615_010 Hb_074240_030--Hb_054615_010 Hb_074240_030--Hb_001357_160 Hb_003050_140 Hb_003050_140 Hb_001439_160--Hb_003050_140 Hb_001439_160--Hb_001221_550 Hb_011930_190 Hb_011930_190 Hb_001439_160--Hb_011930_190 Hb_001439_160--Hb_003592_040 Hb_000735_190 Hb_000735_190 Hb_001439_160--Hb_000735_190 Hb_001221_550--Hb_002893_220 Hb_001221_550--Hb_006586_060 Hb_000130_340 Hb_000130_340 Hb_001221_550--Hb_000130_340 Hb_001221_550--Hb_000735_190 Hb_102129_040 Hb_102129_040 Hb_001221_550--Hb_102129_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0634735 0.440083 188.489 58.3616 0.0183397 0.065852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.445194 0.437866 0 5.67137 58.7268

CAGE analysis