Hb_001439_160

Information

Type -
Description -
Location Contig1439: 164992-167557
Sequence    

Annotation

kegg
ID rcu:RCOM_0537810
description hypothetical protein
nr
ID XP_012084744.1
description PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4K9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19879 PE=4 SV=1
Gene Ontology
ID GO:0005634
description PREDICTED: uncharacterized protein LOC105644097

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11601: 164928-167572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_160 0.0 - - PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]
2 Hb_003050_140 0.0816720815 - - PREDICTED: potassium channel KAT1 [Jatropha curcas]
3 Hb_001221_550 0.1000813344 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
4 Hb_011930_190 0.1002069914 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
5 Hb_001386_060 0.1018276902 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
6 Hb_003592_040 0.1067136781 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
7 Hb_000735_190 0.1099728521 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
8 Hb_000130_340 0.1100224447 - - -
9 Hb_002044_100 0.1108911302 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
10 Hb_001671_070 0.1124681904 - - kinase, putative [Ricinus communis]
11 Hb_000144_130 0.1129321621 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000510_250 0.1139328092 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]
13 Hb_031377_010 0.1146203716 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
14 Hb_002893_220 0.1164350495 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
15 Hb_006586_060 0.1179905979 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_002259_120 0.118716193 - - tonoplast intrinsic protein, putative [Ricinus communis]
17 Hb_006594_030 0.1204963396 - - -
18 Hb_000111_080 0.1210161933 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
19 Hb_000136_120 0.1215056277 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
20 Hb_000167_150 0.1228085682 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]

Gene co-expression network

sample Hb_001439_160 Hb_001439_160 Hb_003050_140 Hb_003050_140 Hb_001439_160--Hb_003050_140 Hb_001221_550 Hb_001221_550 Hb_001439_160--Hb_001221_550 Hb_011930_190 Hb_011930_190 Hb_001439_160--Hb_011930_190 Hb_001386_060 Hb_001386_060 Hb_001439_160--Hb_001386_060 Hb_003592_040 Hb_003592_040 Hb_001439_160--Hb_003592_040 Hb_000735_190 Hb_000735_190 Hb_001439_160--Hb_000735_190 Hb_003050_140--Hb_011930_190 Hb_031377_010 Hb_031377_010 Hb_003050_140--Hb_031377_010 Hb_000144_130 Hb_000144_130 Hb_003050_140--Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_003050_140--Hb_002044_100 Hb_000510_250 Hb_000510_250 Hb_003050_140--Hb_000510_250 Hb_001671_070 Hb_001671_070 Hb_003050_140--Hb_001671_070 Hb_002893_220 Hb_002893_220 Hb_001221_550--Hb_002893_220 Hb_006586_060 Hb_006586_060 Hb_001221_550--Hb_006586_060 Hb_000130_340 Hb_000130_340 Hb_001221_550--Hb_000130_340 Hb_001221_550--Hb_000735_190 Hb_001221_550--Hb_003592_040 Hb_102129_040 Hb_102129_040 Hb_001221_550--Hb_102129_040 Hb_011930_190--Hb_031377_010 Hb_011930_190--Hb_002044_100 Hb_011930_190--Hb_000144_130 Hb_000172_660 Hb_000172_660 Hb_011930_190--Hb_000172_660 Hb_011930_190--Hb_000510_250 Hb_001856_190 Hb_001856_190 Hb_001386_060--Hb_001856_190 Hb_001386_060--Hb_003592_040 Hb_003090_020 Hb_003090_020 Hb_001386_060--Hb_003090_020 Hb_074240_030 Hb_074240_030 Hb_001386_060--Hb_074240_030 Hb_001386_060--Hb_001221_550 Hb_003592_040--Hb_002893_220 Hb_003592_040--Hb_006586_060 Hb_003592_040--Hb_003090_020 Hb_003592_040--Hb_001856_190 Hb_000160_260 Hb_000160_260 Hb_000735_190--Hb_000160_260 Hb_000735_190--Hb_006586_060 Hb_000735_190--Hb_102129_040 Hb_003411_070 Hb_003411_070 Hb_000735_190--Hb_003411_070 Hb_000751_010 Hb_000751_010 Hb_000735_190--Hb_000751_010 Hb_000167_150 Hb_000167_150 Hb_000735_190--Hb_000167_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.38982 0.144785 69.7168 19.2391 0.0185067 0.0983621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21942 0.284192 0.131531 0.356391 25.3037

CAGE analysis