Hb_003592_040

Information

Type -
Description -
Location Contig3592: 41856-42697
Sequence    

Annotation

kegg
ID rcu:RCOM_0317870
description hypothetical protein
nr
ID XP_012085013.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
swissprot
ID Q9SV72
description EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana GN=EPFL9 PE=1 SV=1
trembl
ID A0A0B0MP24
description Epidermal patterning factor-like protein 9 OS=Gossypium arboreum GN=F383_23219 PE=4 SV=1
Gene Ontology
ID GO:0010374
description epidermal patterning factor-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37075: 41708-42844 , PASA_asmbl_37076: 42085-42642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003592_040 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
2 Hb_001386_060 0.0634050554 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
3 Hb_001221_550 0.070503305 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
4 Hb_002893_220 0.071987155 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
5 Hb_006586_060 0.0775413757 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
6 Hb_003090_020 0.0818936213 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
7 Hb_001856_190 0.082193795 - - SP1L, putative [Ricinus communis]
8 Hb_000130_340 0.0827824264 - - -
9 Hb_000735_190 0.0831266605 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
10 Hb_102129_040 0.0892032173 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
11 Hb_074240_030 0.092895944 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
12 Hb_002259_120 0.0942863226 - - tonoplast intrinsic protein, putative [Ricinus communis]
13 Hb_001671_070 0.0964177427 - - kinase, putative [Ricinus communis]
14 Hb_001300_190 0.0964373573 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000160_260 0.0979789338 - - nutrient reservoir, putative [Ricinus communis]
16 Hb_000167_150 0.0983508233 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
17 Hb_006594_030 0.1003710762 - - -
18 Hb_000136_120 0.1018217648 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
19 Hb_000751_010 0.1034698931 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000362_080 0.1038051179 - - hypothetical protein EUTSA_v10027329mg, partial [Eutrema salsugineum]

Gene co-expression network

sample Hb_003592_040 Hb_003592_040 Hb_001386_060 Hb_001386_060 Hb_003592_040--Hb_001386_060 Hb_001221_550 Hb_001221_550 Hb_003592_040--Hb_001221_550 Hb_002893_220 Hb_002893_220 Hb_003592_040--Hb_002893_220 Hb_006586_060 Hb_006586_060 Hb_003592_040--Hb_006586_060 Hb_003090_020 Hb_003090_020 Hb_003592_040--Hb_003090_020 Hb_001856_190 Hb_001856_190 Hb_003592_040--Hb_001856_190 Hb_001386_060--Hb_001856_190 Hb_001386_060--Hb_003090_020 Hb_074240_030 Hb_074240_030 Hb_001386_060--Hb_074240_030 Hb_001439_160 Hb_001439_160 Hb_001386_060--Hb_001439_160 Hb_001386_060--Hb_001221_550 Hb_001221_550--Hb_002893_220 Hb_001221_550--Hb_006586_060 Hb_000130_340 Hb_000130_340 Hb_001221_550--Hb_000130_340 Hb_000735_190 Hb_000735_190 Hb_001221_550--Hb_000735_190 Hb_102129_040 Hb_102129_040 Hb_001221_550--Hb_102129_040 Hb_167188_020 Hb_167188_020 Hb_002893_220--Hb_167188_020 Hb_002259_120 Hb_002259_120 Hb_002893_220--Hb_002259_120 Hb_002893_220--Hb_000130_340 Hb_000816_180 Hb_000816_180 Hb_002893_220--Hb_000816_180 Hb_006586_060--Hb_102129_040 Hb_000751_010 Hb_000751_010 Hb_006586_060--Hb_000751_010 Hb_006586_060--Hb_000735_190 Hb_000167_150 Hb_000167_150 Hb_006586_060--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_006586_060--Hb_000136_120 Hb_003090_020--Hb_001856_190 Hb_003090_020--Hb_074240_030 Hb_001357_160 Hb_001357_160 Hb_003090_020--Hb_001357_160 Hb_000362_080 Hb_000362_080 Hb_003090_020--Hb_000362_080 Hb_001856_190--Hb_074240_030 Hb_000010_320 Hb_000010_320 Hb_001856_190--Hb_000010_320 Hb_001856_190--Hb_001357_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 18.797 5.35582 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.243758 5.88508

CAGE analysis