Hb_000010_320

Information

Type -
Description -
Location Contig10: 365165-369554
Sequence    

Annotation

kegg
ID rcu:RCOM_1507690
description replication factor C / DNA polymerase III gamma-tau subunit, putative (EC:2.7.7.7)
nr
ID XP_012079933.1
description PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
swissprot
ID F4HW65
description Protein STICHEL-like 1 OS=Arabidopsis thaliana GN=At1g14460 PE=1 SV=1
trembl
ID B9RAP9
description Replication factor C / DNA polymerase III gamma-tau subunit, putative OS=Ricinus communis GN=RCOM_1507690 PE=4 SV=1
Gene Ontology
ID GO:0009360
description protein stichel-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00166: 364061-364253 , PASA_asmbl_00167: 365230-365699 , PASA_asmbl_00169: 366966-367915 , PASA_asmbl_00170: 368190-368837 , PASA_asmbl_00171: 368924-369334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_320 0.0 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
2 Hb_074240_030 0.0567386637 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
3 Hb_158845_010 0.0588490669 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
4 Hb_059832_010 0.0671266952 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
5 Hb_015299_040 0.068205809 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
6 Hb_000397_060 0.0800836157 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
7 Hb_001856_190 0.0879595259 - - SP1L, putative [Ricinus communis]
8 Hb_004003_020 0.0881737861 - - unnamed protein product [Coffea canephora]
9 Hb_054615_010 0.0890059636 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
10 Hb_001958_040 0.0913914808 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
11 Hb_001357_160 0.0955264014 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002045_160 0.0980963369 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
13 Hb_000073_040 0.101188257 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
14 Hb_001301_310 0.1035608049 - - conserved hypothetical protein [Ricinus communis]
15 Hb_049846_010 0.1041620894 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
16 Hb_005357_140 0.1046564021 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
17 Hb_001386_060 0.1082004093 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
18 Hb_001369_590 0.1094717785 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
19 Hb_002121_030 0.1096485482 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
20 Hb_002243_030 0.1106419251 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000010_320 Hb_000010_320 Hb_074240_030 Hb_074240_030 Hb_000010_320--Hb_074240_030 Hb_158845_010 Hb_158845_010 Hb_000010_320--Hb_158845_010 Hb_059832_010 Hb_059832_010 Hb_000010_320--Hb_059832_010 Hb_015299_040 Hb_015299_040 Hb_000010_320--Hb_015299_040 Hb_000397_060 Hb_000397_060 Hb_000010_320--Hb_000397_060 Hb_001856_190 Hb_001856_190 Hb_000010_320--Hb_001856_190 Hb_074240_030--Hb_001856_190 Hb_074240_030--Hb_015299_040 Hb_054615_010 Hb_054615_010 Hb_074240_030--Hb_054615_010 Hb_001357_160 Hb_001357_160 Hb_074240_030--Hb_001357_160 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020 Hb_158845_010--Hb_015299_040 Hb_158845_010--Hb_059832_010 Hb_158845_010--Hb_074240_030 Hb_158845_010--Hb_001357_160 Hb_158845_010--Hb_054615_010 Hb_000187_020 Hb_000187_020 Hb_059832_010--Hb_000187_020 Hb_000130_400 Hb_000130_400 Hb_059832_010--Hb_000130_400 Hb_000375_200 Hb_000375_200 Hb_059832_010--Hb_000375_200 Hb_000445_320 Hb_000445_320 Hb_059832_010--Hb_000445_320 Hb_002243_030 Hb_002243_030 Hb_015299_040--Hb_002243_030 Hb_015299_040--Hb_001357_160 Hb_015299_040--Hb_054615_010 Hb_001958_040 Hb_001958_040 Hb_000397_060--Hb_001958_040 Hb_000073_040 Hb_000073_040 Hb_000397_060--Hb_000073_040 Hb_005357_140 Hb_005357_140 Hb_000397_060--Hb_005357_140 Hb_072952_010 Hb_072952_010 Hb_000397_060--Hb_072952_010 Hb_001301_310 Hb_001301_310 Hb_000397_060--Hb_001301_310 Hb_001386_060 Hb_001386_060 Hb_001856_190--Hb_001386_060 Hb_001856_190--Hb_003090_020 Hb_003592_040 Hb_003592_040 Hb_001856_190--Hb_003592_040 Hb_001856_190--Hb_001357_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0489537 2.02798 0.656644 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0320263 0.418297

CAGE analysis