Hb_015299_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig15299: 70007-71218
Sequence    

Annotation

kegg
ID rcu:RCOM_0491270
description r2r3-myb transcription factor, putative
nr
ID XP_012081759.1
description PREDICTED: myb-related protein 308 [Jatropha curcas]
swissprot
ID P81393
description Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1
trembl
ID A0A067K095
description MYB family protein OS=Jatropha curcas GN=JCGZ_18803 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 308-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13155: 70129-71222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015299_040 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
2 Hb_158845_010 0.0448481413 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
3 Hb_002243_030 0.0680838285 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
4 Hb_000010_320 0.068205809 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
5 Hb_074240_030 0.0710342011 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
6 Hb_001357_160 0.0789074048 - - conserved hypothetical protein [Ricinus communis]
7 Hb_054615_010 0.0825709456 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
8 Hb_023344_100 0.087619295 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
9 Hb_059832_010 0.0921641246 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
10 Hb_000340_550 0.097686536 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
11 Hb_004109_100 0.0979850561 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
12 Hb_003777_260 0.0995551633 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
13 Hb_001856_190 0.1028789281 - - SP1L, putative [Ricinus communis]
14 Hb_004422_030 0.1037655419 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
15 Hb_089736_010 0.1045378382 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
16 Hb_001439_240 0.1058454886 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
17 Hb_004459_030 0.1075300517 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
18 Hb_005288_090 0.1082519189 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
19 Hb_004003_020 0.1090242369 - - unnamed protein product [Coffea canephora]
20 Hb_004007_080 0.1094706388 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]

Gene co-expression network

sample Hb_015299_040 Hb_015299_040 Hb_158845_010 Hb_158845_010 Hb_015299_040--Hb_158845_010 Hb_002243_030 Hb_002243_030 Hb_015299_040--Hb_002243_030 Hb_000010_320 Hb_000010_320 Hb_015299_040--Hb_000010_320 Hb_074240_030 Hb_074240_030 Hb_015299_040--Hb_074240_030 Hb_001357_160 Hb_001357_160 Hb_015299_040--Hb_001357_160 Hb_054615_010 Hb_054615_010 Hb_015299_040--Hb_054615_010 Hb_158845_010--Hb_000010_320 Hb_059832_010 Hb_059832_010 Hb_158845_010--Hb_059832_010 Hb_158845_010--Hb_074240_030 Hb_158845_010--Hb_001357_160 Hb_158845_010--Hb_054615_010 Hb_023344_100 Hb_023344_100 Hb_002243_030--Hb_023344_100 Hb_002243_030--Hb_001357_160 Hb_004109_100 Hb_004109_100 Hb_002243_030--Hb_004109_100 Hb_003777_260 Hb_003777_260 Hb_002243_030--Hb_003777_260 Hb_002170_060 Hb_002170_060 Hb_002243_030--Hb_002170_060 Hb_000010_320--Hb_074240_030 Hb_000010_320--Hb_059832_010 Hb_000397_060 Hb_000397_060 Hb_000010_320--Hb_000397_060 Hb_001856_190 Hb_001856_190 Hb_000010_320--Hb_001856_190 Hb_074240_030--Hb_001856_190 Hb_074240_030--Hb_054615_010 Hb_074240_030--Hb_001357_160 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020 Hb_001357_160--Hb_001856_190 Hb_001357_160--Hb_000010_320 Hb_089736_010 Hb_089736_010 Hb_054615_010--Hb_089736_010 Hb_004003_020 Hb_004003_020 Hb_054615_010--Hb_004003_020 Hb_088118_010 Hb_088118_010 Hb_054615_010--Hb_088118_010 Hb_000152_650 Hb_000152_650 Hb_054615_010--Hb_000152_650 Hb_002121_030 Hb_002121_030 Hb_054615_010--Hb_002121_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135861 2.71934 97.8883 26.466 0.0778522 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.41669 15.5351

CAGE analysis