Hb_002170_060

Information

Type -
Description -
Location Contig2170: 128089-142795
Sequence    

Annotation

kegg
ID vvi:100240770
description mitogen-activated protein kinase-binding protein 1
nr
ID XP_012087912.1
description PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
swissprot
ID Q6DFF9
description Mitogen-activated protein kinase-binding protein 1 OS=Xenopus laevis GN=mapkbp1 PE=2 SV=1
trembl
ID A0A067JWV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25054 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22411: 129069-134136 , PASA_asmbl_22412: 135133-135496 , PASA_asmbl_22413: 135511-136413 , PASA_asmbl_22414: 136426-137323 , PASA_asmbl_22416: 140450-142385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002170_060 0.0 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
2 Hb_008643_220 0.068119721 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
3 Hb_000664_080 0.0821770173 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
4 Hb_002243_030 0.0942629169 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
5 Hb_005568_140 0.0942941353 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004109_100 0.0976836259 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
7 Hb_002918_220 0.1014542443 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
8 Hb_003992_130 0.1033849378 - - unnamed protein product [Vitis vinifera]
9 Hb_004459_030 0.1128336595 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
10 Hb_003626_020 0.1137610367 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
11 Hb_015299_040 0.114621613 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
12 Hb_001357_160 0.1190969621 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003777_260 0.1211283364 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
14 Hb_004213_010 0.1225600281 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_001153_160 0.1239985499 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
16 Hb_000035_150 0.1247514645 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
17 Hb_010267_020 0.1257705167 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
18 Hb_002205_160 0.1258742892 - - chalcone isomerase [Hibiscus cannabinus]
19 Hb_000343_010 0.1266101928 - - F3F9.11 [Arabidopsis thaliana]
20 Hb_023344_100 0.1272162961 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_002170_060 Hb_002170_060 Hb_008643_220 Hb_008643_220 Hb_002170_060--Hb_008643_220 Hb_000664_080 Hb_000664_080 Hb_002170_060--Hb_000664_080 Hb_002243_030 Hb_002243_030 Hb_002170_060--Hb_002243_030 Hb_005568_140 Hb_005568_140 Hb_002170_060--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002170_060--Hb_004109_100 Hb_002918_220 Hb_002918_220 Hb_002170_060--Hb_002918_220 Hb_008643_220--Hb_000664_080 Hb_001579_190 Hb_001579_190 Hb_008643_220--Hb_001579_190 Hb_008643_220--Hb_002243_030 Hb_000343_010 Hb_000343_010 Hb_008643_220--Hb_000343_010 Hb_003992_130 Hb_003992_130 Hb_008643_220--Hb_003992_130 Hb_004459_030 Hb_004459_030 Hb_000664_080--Hb_004459_030 Hb_000664_080--Hb_002243_030 Hb_000032_080 Hb_000032_080 Hb_000664_080--Hb_000032_080 Hb_003626_020 Hb_003626_020 Hb_000664_080--Hb_003626_020 Hb_023344_100 Hb_023344_100 Hb_002243_030--Hb_023344_100 Hb_015299_040 Hb_015299_040 Hb_002243_030--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_002243_030--Hb_001357_160 Hb_002243_030--Hb_004109_100 Hb_003777_260 Hb_003777_260 Hb_002243_030--Hb_003777_260 Hb_005568_140--Hb_002918_220 Hb_005568_140--Hb_004109_100 Hb_001571_080 Hb_001571_080 Hb_005568_140--Hb_001571_080 Hb_010267_020 Hb_010267_020 Hb_005568_140--Hb_010267_020 Hb_004422_030 Hb_004422_030 Hb_005568_140--Hb_004422_030 Hb_004109_100--Hb_002918_220 Hb_004109_100--Hb_003777_260 Hb_004109_100--Hb_015299_040 Hb_002918_220--Hb_004422_030 Hb_002918_220--Hb_001571_080 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240 Hb_002918_220--Hb_010267_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0151894 0.134072 2.27754 0.528476 0.00473759 0.00883895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0173264 0.193132 0.347962

CAGE analysis