Hb_004459_030

Information

Type -
Description -
Location Contig4459: 29890-33233
Sequence    

Annotation

kegg
ID rcu:RCOM_1014500
description hypothetical protein
nr
ID XP_012091745.1
description PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID A0A067JNJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21545 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42999: 29800-33122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004459_030 0.0 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
2 Hb_002473_030 0.0859748354 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
3 Hb_000032_080 0.0864847359 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
4 Hb_005649_050 0.093598319 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000664_080 0.0966851452 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
6 Hb_004007_080 0.0977642377 - - PREDICTED: BTB/POZ domain-containing protein At3g49900 [Jatropha curcas]
7 Hb_011063_030 0.105909195 - - protein with unknown function [Ricinus communis]
8 Hb_015299_040 0.1075300517 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
9 Hb_000421_060 0.1099849144 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
10 Hb_162378_020 0.1124176 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
11 Hb_002170_060 0.1128336595 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
12 Hb_000316_070 0.1143476621 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
13 Hb_001864_040 0.114932658 - - PREDICTED: kinesin-1 [Jatropha curcas]
14 Hb_039812_010 0.1152630305 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
15 Hb_002243_030 0.1157888279 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
16 Hb_004963_020 0.1160661887 - - PREDICTED: patellin-4 [Populus euphratica]
17 Hb_001220_020 0.1169830139 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
18 Hb_001564_100 0.1179876505 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
19 Hb_004422_030 0.1202143499 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
20 Hb_000265_100 0.1204357104 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]

Gene co-expression network

sample Hb_004459_030 Hb_004459_030 Hb_002473_030 Hb_002473_030 Hb_004459_030--Hb_002473_030 Hb_000032_080 Hb_000032_080 Hb_004459_030--Hb_000032_080 Hb_005649_050 Hb_005649_050 Hb_004459_030--Hb_005649_050 Hb_000664_080 Hb_000664_080 Hb_004459_030--Hb_000664_080 Hb_004007_080 Hb_004007_080 Hb_004459_030--Hb_004007_080 Hb_011063_030 Hb_011063_030 Hb_004459_030--Hb_011063_030 Hb_002473_030--Hb_005649_050 Hb_004963_020 Hb_004963_020 Hb_002473_030--Hb_004963_020 Hb_004032_390 Hb_004032_390 Hb_002473_030--Hb_004032_390 Hb_001220_020 Hb_001220_020 Hb_002473_030--Hb_001220_020 Hb_002837_030 Hb_002837_030 Hb_002473_030--Hb_002837_030 Hb_003398_050 Hb_003398_050 Hb_002473_030--Hb_003398_050 Hb_162378_020 Hb_162378_020 Hb_000032_080--Hb_162378_020 Hb_000032_080--Hb_011063_030 Hb_000032_080--Hb_001220_020 Hb_064396_010 Hb_064396_010 Hb_000032_080--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_000032_080--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260 Hb_005649_050--Hb_004963_020 Hb_002197_010 Hb_002197_010 Hb_005649_050--Hb_002197_010 Hb_001210_030 Hb_001210_030 Hb_005649_050--Hb_001210_030 Hb_005649_050--Hb_002837_030 Hb_005649_050--Hb_162378_020 Hb_002170_060 Hb_002170_060 Hb_000664_080--Hb_002170_060 Hb_008643_220 Hb_008643_220 Hb_000664_080--Hb_008643_220 Hb_002243_030 Hb_002243_030 Hb_000664_080--Hb_002243_030 Hb_000664_080--Hb_000032_080 Hb_003626_020 Hb_003626_020 Hb_000664_080--Hb_003626_020 Hb_000527_030 Hb_000527_030 Hb_004007_080--Hb_000527_030 Hb_006519_020 Hb_006519_020 Hb_004007_080--Hb_006519_020 Hb_052530_010 Hb_052530_010 Hb_004007_080--Hb_052530_010 Hb_000816_080 Hb_000816_080 Hb_004007_080--Hb_000816_080 Hb_088118_010 Hb_088118_010 Hb_004007_080--Hb_088118_010 Hb_103339_010 Hb_103339_010 Hb_004007_080--Hb_103339_010 Hb_011063_030--Hb_162378_020 Hb_001235_040 Hb_001235_040 Hb_011063_030--Hb_001235_040 Hb_011063_030--Hb_001220_020 Hb_011063_030--Hb_064396_010 Hb_000227_020 Hb_000227_020 Hb_011063_030--Hb_000227_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.165763 0.479911 18.9833 3.82058 0.0377707 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0177279 0.0336191 0.916872 1.46122

CAGE analysis