Hb_005649_050

Information

Type -
Description -
Location Contig5649: 36103-36837
Sequence    

Annotation

kegg
ID rcu:RCOM_1025190
description hypothetical protein
nr
ID XP_002527615.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNP6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1025190 PE=4 SV=1
Gene Ontology
ID GO:0044763
description hydroxyproline-rich glycoprotein family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48971: 36052-36250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005649_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002473_030 0.0585213422 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
3 Hb_004963_020 0.0762636873 - - PREDICTED: patellin-4 [Populus euphratica]
4 Hb_002197_010 0.0846695832 - - cyclin d, putative [Ricinus communis]
5 Hb_001210_030 0.085750211 - - PREDICTED: plectin [Jatropha curcas]
6 Hb_002837_030 0.0872191145 - - conserved hypothetical protein [Ricinus communis]
7 Hb_162378_020 0.0897235697 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
8 Hb_004459_030 0.093598319 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
9 Hb_001564_100 0.0951752513 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
10 Hb_001235_040 0.0951814538 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
11 Hb_004032_390 0.0975090952 - - CDK, putative [Ricinus communis]
12 Hb_001220_020 0.0976358927 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
13 Hb_006788_130 0.0989789638 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
14 Hb_000316_070 0.1004148368 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
15 Hb_011063_030 0.1018497263 - - protein with unknown function [Ricinus communis]
16 Hb_064396_010 0.1044581686 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000032_080 0.1051687457 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
18 Hb_003398_050 0.1060728079 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
19 Hb_000614_200 0.106495915 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
20 Hb_001864_040 0.108965029 - - PREDICTED: kinesin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_005649_050 Hb_005649_050 Hb_002473_030 Hb_002473_030 Hb_005649_050--Hb_002473_030 Hb_004963_020 Hb_004963_020 Hb_005649_050--Hb_004963_020 Hb_002197_010 Hb_002197_010 Hb_005649_050--Hb_002197_010 Hb_001210_030 Hb_001210_030 Hb_005649_050--Hb_001210_030 Hb_002837_030 Hb_002837_030 Hb_005649_050--Hb_002837_030 Hb_162378_020 Hb_162378_020 Hb_005649_050--Hb_162378_020 Hb_002473_030--Hb_004963_020 Hb_004032_390 Hb_004032_390 Hb_002473_030--Hb_004032_390 Hb_001220_020 Hb_001220_020 Hb_002473_030--Hb_001220_020 Hb_002473_030--Hb_002837_030 Hb_003398_050 Hb_003398_050 Hb_002473_030--Hb_003398_050 Hb_000316_070 Hb_000316_070 Hb_004963_020--Hb_000316_070 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_004963_020--Hb_002837_030 Hb_002197_010--Hb_001210_030 Hb_002197_010--Hb_002473_030 Hb_002197_010--Hb_003398_050 Hb_002197_010--Hb_001220_020 Hb_002197_010--Hb_162378_020 Hb_001210_030--Hb_002473_030 Hb_001210_030--Hb_003398_050 Hb_001210_030--Hb_001220_020 Hb_001210_030--Hb_162378_020 Hb_002837_030--Hb_004032_390 Hb_001564_100 Hb_001564_100 Hb_002837_030--Hb_001564_100 Hb_002837_030--Hb_162378_020 Hb_162378_020--Hb_001220_020 Hb_011063_030 Hb_011063_030 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_162378_020--Hb_004032_390 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.282149 1.56412 59.408 13.5195 0.0530772 0.0506374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.311213 0.352198 2.32663 1.74924

CAGE analysis