Hb_001210_030

Information

Type -
Description -
Location Contig1210: 20104-23266
Sequence    

Annotation

kegg
ID pop:POPTR_0003s05730g
description POPTRDRAFT_645891; hypothetical protein
nr
ID XP_012073274.1
description PREDICTED: plectin [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQ97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06214 PE=4 SV=1
Gene Ontology
ID GO:0006259
description fk506-binding protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06468: 20220-20664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001210_030 0.0 - - PREDICTED: plectin [Jatropha curcas]
2 Hb_002197_010 0.0328596649 - - cyclin d, putative [Ricinus communis]
3 Hb_005649_050 0.085750211 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002473_030 0.0867049052 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
5 Hb_003398_050 0.08914618 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
6 Hb_001220_020 0.0917294329 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
7 Hb_162378_020 0.0942695532 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
8 Hb_002374_090 0.0962696936 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
9 Hb_003776_050 0.0967771461 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
10 Hb_004032_390 0.0970361514 - - CDK, putative [Ricinus communis]
11 Hb_000614_200 0.0983101069 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
12 Hb_064396_010 0.1049275323 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_004963_020 0.1049981603 - - PREDICTED: patellin-4 [Populus euphratica]
14 Hb_002928_150 0.1053554803 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
15 Hb_001235_040 0.1061927641 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
16 Hb_011063_030 0.1074721937 - - protein with unknown function [Ricinus communis]
17 Hb_119044_040 0.1082507262 - - cyclin B, putative [Ricinus communis]
18 Hb_000421_060 0.1083111339 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
19 Hb_001969_120 0.1089814578 - - PREDICTED: plectin [Jatropha curcas]
20 Hb_004174_030 0.109155608 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]

Gene co-expression network

sample Hb_001210_030 Hb_001210_030 Hb_002197_010 Hb_002197_010 Hb_001210_030--Hb_002197_010 Hb_005649_050 Hb_005649_050 Hb_001210_030--Hb_005649_050 Hb_002473_030 Hb_002473_030 Hb_001210_030--Hb_002473_030 Hb_003398_050 Hb_003398_050 Hb_001210_030--Hb_003398_050 Hb_001220_020 Hb_001220_020 Hb_001210_030--Hb_001220_020 Hb_162378_020 Hb_162378_020 Hb_001210_030--Hb_162378_020 Hb_002197_010--Hb_005649_050 Hb_002197_010--Hb_002473_030 Hb_002197_010--Hb_003398_050 Hb_002197_010--Hb_001220_020 Hb_002197_010--Hb_162378_020 Hb_005649_050--Hb_002473_030 Hb_004963_020 Hb_004963_020 Hb_005649_050--Hb_004963_020 Hb_002837_030 Hb_002837_030 Hb_005649_050--Hb_002837_030 Hb_005649_050--Hb_162378_020 Hb_002473_030--Hb_004963_020 Hb_004032_390 Hb_004032_390 Hb_002473_030--Hb_004032_390 Hb_002473_030--Hb_001220_020 Hb_002473_030--Hb_002837_030 Hb_002473_030--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_003398_050--Hb_002928_150 Hb_003398_050--Hb_001220_020 Hb_003776_050 Hb_003776_050 Hb_003398_050--Hb_003776_050 Hb_003398_050--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_003398_050--Hb_004174_030 Hb_005914_100 Hb_005914_100 Hb_003398_050--Hb_005914_100 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_004174_030 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040 Hb_011063_030 Hb_011063_030 Hb_162378_020--Hb_011063_030 Hb_000032_080 Hb_000032_080 Hb_162378_020--Hb_000032_080 Hb_162378_020--Hb_004032_390 Hb_064396_010 Hb_064396_010 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00851718 0.192537 14.8337 4.17592 0.024472 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0152177 0.289582 0.84051 0.484247

CAGE analysis