Hb_011063_030

Information

Type -
Description -
Location Contig11063: 6354-9634
Sequence    

Annotation

kegg
ID rcu:RCOM_0871920
description protein with unknown function
nr
ID XP_002521677.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID B9S6Q8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0871920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03329: 6393-7673 , PASA_asmbl_03330: 7682-9687 , PASA_asmbl_03331: 8814-9154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011063_030 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_162378_020 0.0502820851 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
3 Hb_001235_040 0.0577233975 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
4 Hb_000032_080 0.0591012917 transcription factor TF Family: HMG transcription factor, putative [Ricinus communis]
5 Hb_001220_020 0.0788257929 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
6 Hb_064396_010 0.0820805562 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000227_020 0.0881632413 - - PREDICTED: basic 7S globulin-like [Jatropha curcas]
8 Hb_002686_070 0.0893763822 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007044_260 0.0894793746 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
10 Hb_004032_390 0.0941660305 - - CDK, putative [Ricinus communis]
11 Hb_002473_030 0.0957518433 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
12 Hb_003398_050 0.0963544457 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
13 Hb_006788_130 0.0997190362 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
14 Hb_005649_050 0.1018497263 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001564_100 0.1038380989 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
16 Hb_000421_060 0.1053602574 - - PREDICTED: uncharacterized protein LOC105628158 [Jatropha curcas]
17 Hb_000084_230 0.1056355747 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
18 Hb_002837_030 0.1057905511 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004459_030 0.105909195 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
20 Hb_010021_060 0.1065893454 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_011063_030 Hb_011063_030 Hb_162378_020 Hb_162378_020 Hb_011063_030--Hb_162378_020 Hb_001235_040 Hb_001235_040 Hb_011063_030--Hb_001235_040 Hb_000032_080 Hb_000032_080 Hb_011063_030--Hb_000032_080 Hb_001220_020 Hb_001220_020 Hb_011063_030--Hb_001220_020 Hb_064396_010 Hb_064396_010 Hb_011063_030--Hb_064396_010 Hb_000227_020 Hb_000227_020 Hb_011063_030--Hb_000227_020 Hb_162378_020--Hb_001220_020 Hb_162378_020--Hb_000032_080 Hb_004032_390 Hb_004032_390 Hb_162378_020--Hb_004032_390 Hb_162378_020--Hb_064396_010 Hb_002686_070 Hb_002686_070 Hb_162378_020--Hb_002686_070 Hb_006788_130 Hb_006788_130 Hb_001235_040--Hb_006788_130 Hb_000084_230 Hb_000084_230 Hb_001235_040--Hb_000084_230 Hb_001235_040--Hb_162378_020 Hb_001235_040--Hb_001220_020 Hb_001564_100 Hb_001564_100 Hb_001235_040--Hb_001564_100 Hb_000032_080--Hb_001220_020 Hb_000032_080--Hb_064396_010 Hb_000032_080--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_000032_080--Hb_007044_260 Hb_003398_050 Hb_003398_050 Hb_001220_020--Hb_003398_050 Hb_001220_020--Hb_004032_390 Hb_004174_030 Hb_004174_030 Hb_001220_020--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_001220_020--Hb_002928_150 Hb_064396_010--Hb_002686_070 Hb_064396_010--Hb_000227_020 Hb_064396_010--Hb_001220_020 Hb_000227_020--Hb_162378_020 Hb_000227_020--Hb_002686_070 Hb_000227_020--Hb_001235_040 Hb_000227_020--Hb_000032_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14456 0.38443 40.9618 8.49978 0.0688101 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.11367 1.19342

CAGE analysis