Hb_000084_230

Information

Type -
Description -
Location Contig84: 202711-203970
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08030g
description POPTRDRAFT_256578; hypothetical protein
nr
ID XP_002323426.2
description hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID B9IIU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08030g PE=4 SV=2
Gene Ontology
ID GO:0005623
description hypothetical protein POPTR_0016s08030g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60042: 202886-203103 , PASA_asmbl_60043: 203158-203383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_230 0.0 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
2 Hb_006788_130 0.0265841638 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
3 Hb_001564_100 0.0433167747 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
4 Hb_001235_040 0.0566806721 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]
5 Hb_004174_030 0.0802329513 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
6 Hb_001220_020 0.0822582495 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
7 Hb_028995_020 0.084244815 - - PREDICTED: uncharacterized protein LOC105642143 [Jatropha curcas]
8 Hb_006332_030 0.0912995428 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
9 Hb_004097_030 0.0919800446 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
10 Hb_011218_020 0.09271833 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003018_210 0.0936255966 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
12 Hb_002837_120 0.0944319617 - - PREDICTED: legumin A-like [Jatropha curcas]
13 Hb_003398_050 0.0965335483 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
14 Hb_004117_240 0.1003340815 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
15 Hb_001969_030 0.1036718957 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002473_030 0.1042131195 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
17 Hb_162378_020 0.1042406283 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
18 Hb_011859_010 0.1051487095 - - hypothetical protein VITISV_027923 [Vitis vinifera]
19 Hb_004032_390 0.1053011815 - - CDK, putative [Ricinus communis]
20 Hb_011063_030 0.1056355747 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000084_230 Hb_000084_230 Hb_006788_130 Hb_006788_130 Hb_000084_230--Hb_006788_130 Hb_001564_100 Hb_001564_100 Hb_000084_230--Hb_001564_100 Hb_001235_040 Hb_001235_040 Hb_000084_230--Hb_001235_040 Hb_004174_030 Hb_004174_030 Hb_000084_230--Hb_004174_030 Hb_001220_020 Hb_001220_020 Hb_000084_230--Hb_001220_020 Hb_028995_020 Hb_028995_020 Hb_000084_230--Hb_028995_020 Hb_006788_130--Hb_001564_100 Hb_006788_130--Hb_001235_040 Hb_006788_130--Hb_001220_020 Hb_006788_130--Hb_004174_030 Hb_003018_210 Hb_003018_210 Hb_006788_130--Hb_003018_210 Hb_001564_100--Hb_001235_040 Hb_001564_100--Hb_001220_020 Hb_011859_010 Hb_011859_010 Hb_001564_100--Hb_011859_010 Hb_006332_030 Hb_006332_030 Hb_001564_100--Hb_006332_030 Hb_011063_030 Hb_011063_030 Hb_001235_040--Hb_011063_030 Hb_162378_020 Hb_162378_020 Hb_001235_040--Hb_162378_020 Hb_001235_040--Hb_001220_020 Hb_004097_030 Hb_004097_030 Hb_004174_030--Hb_004097_030 Hb_004174_030--Hb_003018_210 Hb_005914_100 Hb_005914_100 Hb_004174_030--Hb_005914_100 Hb_004174_030--Hb_001220_020 Hb_003398_050 Hb_003398_050 Hb_004174_030--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_004174_030--Hb_002928_150 Hb_001220_020--Hb_003398_050 Hb_004032_390 Hb_004032_390 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_002928_150 Hb_028995_020--Hb_006332_030 Hb_011218_020 Hb_011218_020 Hb_028995_020--Hb_011218_020 Hb_000175_110 Hb_000175_110 Hb_028995_020--Hb_000175_110 Hb_000563_110 Hb_000563_110 Hb_028995_020--Hb_000563_110 Hb_001652_090 Hb_001652_090 Hb_028995_020--Hb_001652_090 Hb_012368_040 Hb_012368_040 Hb_028995_020--Hb_012368_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167709 0.0808787 17.9857 4.13279 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.397727 0.312425

CAGE analysis