Hb_008643_220

Information

Type -
Description -
Location Contig8643: 210602-223119
Sequence    

Annotation

kegg
ID rcu:RCOM_0105230
description kinase, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012084889.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
swissprot
ID C0LGG8
description Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1
trembl
ID A0A067JT57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20306 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at1g53430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60905: 214867-215438 , PASA_asmbl_60906: 215719-217306 , PASA_asmbl_60907: 217542-217965 , PASA_asmbl_60908: 218595-219384 , PASA_asmbl_60909: 219396-223131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008643_220 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
2 Hb_002170_060 0.068119721 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
3 Hb_000664_080 0.0874799557 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
4 Hb_001579_190 0.103983459 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002243_030 0.1116644443 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
6 Hb_000343_010 0.1135798988 - - F3F9.11 [Arabidopsis thaliana]
7 Hb_003992_130 0.1172194411 - - unnamed protein product [Vitis vinifera]
8 Hb_000035_150 0.1182939924 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
9 Hb_004109_100 0.120721019 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
10 Hb_004213_010 0.123162152 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_001153_160 0.1240534762 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
12 Hb_007643_060 0.1311056189 - - -
13 Hb_005568_140 0.1312279906 - - ATP binding protein, putative [Ricinus communis]
14 Hb_004223_170 0.1329108466 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
15 Hb_002918_220 0.1347504323 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
16 Hb_000110_240 0.1355566691 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
17 Hb_001357_160 0.135629689 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002205_160 0.1366742589 - - chalcone isomerase [Hibiscus cannabinus]
19 Hb_003626_020 0.1375033687 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
20 Hb_023344_100 0.1377961031 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_008643_220 Hb_008643_220 Hb_002170_060 Hb_002170_060 Hb_008643_220--Hb_002170_060 Hb_000664_080 Hb_000664_080 Hb_008643_220--Hb_000664_080 Hb_001579_190 Hb_001579_190 Hb_008643_220--Hb_001579_190 Hb_002243_030 Hb_002243_030 Hb_008643_220--Hb_002243_030 Hb_000343_010 Hb_000343_010 Hb_008643_220--Hb_000343_010 Hb_003992_130 Hb_003992_130 Hb_008643_220--Hb_003992_130 Hb_002170_060--Hb_000664_080 Hb_002170_060--Hb_002243_030 Hb_005568_140 Hb_005568_140 Hb_002170_060--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002170_060--Hb_004109_100 Hb_002918_220 Hb_002918_220 Hb_002170_060--Hb_002918_220 Hb_004459_030 Hb_004459_030 Hb_000664_080--Hb_004459_030 Hb_000664_080--Hb_002243_030 Hb_000032_080 Hb_000032_080 Hb_000664_080--Hb_000032_080 Hb_003626_020 Hb_003626_020 Hb_000664_080--Hb_003626_020 Hb_000110_240 Hb_000110_240 Hb_001579_190--Hb_000110_240 Hb_000494_010 Hb_000494_010 Hb_001579_190--Hb_000494_010 Hb_005116_130 Hb_005116_130 Hb_001579_190--Hb_005116_130 Hb_010407_150 Hb_010407_150 Hb_001579_190--Hb_010407_150 Hb_010683_070 Hb_010683_070 Hb_001579_190--Hb_010683_070 Hb_023344_100 Hb_023344_100 Hb_002243_030--Hb_023344_100 Hb_015299_040 Hb_015299_040 Hb_002243_030--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_002243_030--Hb_001357_160 Hb_002243_030--Hb_004109_100 Hb_003777_260 Hb_003777_260 Hb_002243_030--Hb_003777_260 Hb_006615_220 Hb_006615_220 Hb_000343_010--Hb_006615_220 Hb_000035_150 Hb_000035_150 Hb_000343_010--Hb_000035_150 Hb_007643_060 Hb_007643_060 Hb_000343_010--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_000343_010--Hb_007951_020 Hb_004607_020 Hb_004607_020 Hb_000343_010--Hb_004607_020 Hb_000343_010--Hb_003626_020 Hb_003992_130--Hb_000035_150 Hb_004213_010 Hb_004213_010 Hb_003992_130--Hb_004213_010 Hb_001153_160 Hb_001153_160 Hb_003992_130--Hb_001153_160 Hb_003992_130--Hb_003626_020 Hb_027337_010 Hb_027337_010 Hb_003992_130--Hb_027337_010 Hb_108576_020 Hb_108576_020 Hb_003992_130--Hb_108576_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0350867 0.249261 3.76971 0.710277 0.00455543 0.0205414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0103116 0.01623 0.0155944 0.347059 0.696035

CAGE analysis