Hb_005116_130

Information

Type -
Description -
Location Contig5116: 141701-143237
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23110g
description POPTRDRAFT_205442; hypothetical protein
nr
ID XP_012092246.1
description PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
swissprot
ID Q9LYA9
description Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1
trembl
ID A0A067JC87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21932 PE=4 SV=1
Gene Ontology
ID GO:0005840
description chloroplast stem-loop binding protein of 41 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005116_130 0.0 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
2 Hb_000494_010 0.0759378049 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
3 Hb_046590_010 0.0905127215 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
4 Hb_000110_240 0.0924457348 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
5 Hb_000188_070 0.1039830364 - - calcineurin-like phosphoesterase [Manihot esculenta]
6 Hb_001442_050 0.1096539755 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
7 Hb_001655_080 0.110638788 - - Purple acid phosphatase precursor, putative [Ricinus communis]
8 Hb_002710_040 0.1135491623 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
9 Hb_033834_020 0.1152398155 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001958_030 0.1201298719 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
11 Hb_002918_170 0.1208496889 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
12 Hb_001638_190 0.1225691848 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
13 Hb_000358_160 0.1228276111 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
14 Hb_001579_190 0.1248345855 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000692_060 0.1271201417 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_003387_010 0.1276187555 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
17 Hb_002843_130 0.1306188175 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
18 Hb_002499_050 0.1309752949 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_104014_010 0.1338236129 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
20 Hb_003077_010 0.1349635461 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005116_130 Hb_005116_130 Hb_000494_010 Hb_000494_010 Hb_005116_130--Hb_000494_010 Hb_046590_010 Hb_046590_010 Hb_005116_130--Hb_046590_010 Hb_000110_240 Hb_000110_240 Hb_005116_130--Hb_000110_240 Hb_000188_070 Hb_000188_070 Hb_005116_130--Hb_000188_070 Hb_001442_050 Hb_001442_050 Hb_005116_130--Hb_001442_050 Hb_001655_080 Hb_001655_080 Hb_005116_130--Hb_001655_080 Hb_000494_010--Hb_000110_240 Hb_000494_010--Hb_046590_010 Hb_001579_190 Hb_001579_190 Hb_000494_010--Hb_001579_190 Hb_003077_010 Hb_003077_010 Hb_000494_010--Hb_003077_010 Hb_000500_330 Hb_000500_330 Hb_000494_010--Hb_000500_330 Hb_046590_010--Hb_001655_080 Hb_046590_010--Hb_000188_070 Hb_046590_010--Hb_000110_240 Hb_104014_010 Hb_104014_010 Hb_046590_010--Hb_104014_010 Hb_000110_240--Hb_000500_330 Hb_000110_240--Hb_001579_190 Hb_000110_240--Hb_001442_050 Hb_033834_020 Hb_033834_020 Hb_000188_070--Hb_033834_020 Hb_000692_060 Hb_000692_060 Hb_000188_070--Hb_000692_060 Hb_001958_030 Hb_001958_030 Hb_000188_070--Hb_001958_030 Hb_007254_010 Hb_007254_010 Hb_000188_070--Hb_007254_010 Hb_001638_190 Hb_001638_190 Hb_000188_070--Hb_001638_190 Hb_000928_100 Hb_000928_100 Hb_000188_070--Hb_000928_100 Hb_002027_100 Hb_002027_100 Hb_001442_050--Hb_002027_100 Hb_000345_400 Hb_000345_400 Hb_001442_050--Hb_000345_400 Hb_000358_160 Hb_000358_160 Hb_001442_050--Hb_000358_160 Hb_000123_360 Hb_000123_360 Hb_001442_050--Hb_000123_360 Hb_110266_010 Hb_110266_010 Hb_001442_050--Hb_110266_010 Hb_001442_050--Hb_001638_190 Hb_001655_080--Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_001655_080--Hb_092516_010 Hb_027684_010 Hb_027684_010 Hb_001655_080--Hb_027684_010 Hb_001269_060 Hb_001269_060 Hb_001655_080--Hb_001269_060 Hb_001655_080--Hb_001638_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103962 0.666972 7.79156 1.15422 0.0231675 0.0516284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105834 0 0 0.301514 2.71753

CAGE analysis