Hb_000500_330

Information

Type -
Description -
Location Contig500: 243085-246002
Sequence    

Annotation

kegg
ID vvi:100262300
description bidirectional sugar transporter SWEET2a
nr
ID XP_012091868.1
description PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
swissprot
ID Q5JJY5
description Bidirectional sugar transporter SWEET2a OS=Oryza sativa subsp. japonica GN=SWEET2A PE=2 SV=1
trembl
ID D7TJV0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g02190 PE=4 SV=1
Gene Ontology
ID GO:0008643
description bidirectional sugar transporter sweet2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45767: 242942-245830 , PASA_asmbl_45769: 242942-245830 , PASA_asmbl_45770: 243784-243988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_330 0.0 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
2 Hb_000110_240 0.0973670754 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
3 Hb_000494_010 0.1250680888 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
4 Hb_004846_230 0.1267255425 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
5 Hb_000028_150 0.1374526906 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
6 Hb_005116_130 0.1401346633 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
7 Hb_046590_010 0.1475527993 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
8 Hb_003077_010 0.1479043768 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000264_160 0.150914988 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
10 Hb_001579_190 0.1513073342 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002540_060 0.1514257023 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
12 Hb_000207_140 0.1553537838 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
13 Hb_000574_380 0.1562073731 - - hydrolase, putative [Ricinus communis]
14 Hb_006788_090 0.1570109427 - - -
15 Hb_000483_270 0.1576294107 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
16 Hb_002435_090 0.1625811437 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
17 Hb_001396_040 0.1629617895 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
18 Hb_002799_120 0.1636859559 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
19 Hb_007317_100 0.1647824837 - - Peflin, putative [Ricinus communis]
20 Hb_002843_130 0.1651281743 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000500_330 Hb_000500_330 Hb_000110_240 Hb_000110_240 Hb_000500_330--Hb_000110_240 Hb_000494_010 Hb_000494_010 Hb_000500_330--Hb_000494_010 Hb_004846_230 Hb_004846_230 Hb_000500_330--Hb_004846_230 Hb_000028_150 Hb_000028_150 Hb_000500_330--Hb_000028_150 Hb_005116_130 Hb_005116_130 Hb_000500_330--Hb_005116_130 Hb_046590_010 Hb_046590_010 Hb_000500_330--Hb_046590_010 Hb_000110_240--Hb_000494_010 Hb_000110_240--Hb_005116_130 Hb_000110_240--Hb_046590_010 Hb_001579_190 Hb_001579_190 Hb_000110_240--Hb_001579_190 Hb_001442_050 Hb_001442_050 Hb_000110_240--Hb_001442_050 Hb_000494_010--Hb_005116_130 Hb_000494_010--Hb_046590_010 Hb_000494_010--Hb_001579_190 Hb_003077_010 Hb_003077_010 Hb_000494_010--Hb_003077_010 Hb_006788_090 Hb_006788_090 Hb_004846_230--Hb_006788_090 Hb_002942_120 Hb_002942_120 Hb_004846_230--Hb_002942_120 Hb_001396_040 Hb_001396_040 Hb_004846_230--Hb_001396_040 Hb_002794_040 Hb_002794_040 Hb_004846_230--Hb_002794_040 Hb_004218_050 Hb_004218_050 Hb_004846_230--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_000028_150--Hb_002540_060 Hb_002986_140 Hb_002986_140 Hb_000028_150--Hb_002986_140 Hb_001343_120 Hb_001343_120 Hb_000028_150--Hb_001343_120 Hb_002435_090 Hb_002435_090 Hb_000028_150--Hb_002435_090 Hb_000028_150--Hb_001442_050 Hb_005116_130--Hb_046590_010 Hb_000188_070 Hb_000188_070 Hb_005116_130--Hb_000188_070 Hb_005116_130--Hb_001442_050 Hb_001655_080 Hb_001655_080 Hb_005116_130--Hb_001655_080 Hb_046590_010--Hb_001655_080 Hb_046590_010--Hb_000188_070 Hb_104014_010 Hb_104014_010 Hb_046590_010--Hb_104014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.34265 28.2286 336.929 28.0489 3.58426 6.37577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.47501 5.19506 4.08305 8.96451 78.2738

CAGE analysis