Hb_002986_140

Information

Type -
Description -
Location Contig2986: 117077-121085
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11210g
description POPTRDRAFT_832346; hypothetical protein
nr
ID XP_012079206.1
description PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12370 PE=4 SV=1
Gene Ontology
ID GO:0008146
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31198: 117214-121083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002986_140 0.0 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
2 Hb_000028_150 0.1220335782 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
3 Hb_002942_120 0.1422967566 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
4 Hb_003638_040 0.1545166101 - - kinesin heavy chain, putative [Ricinus communis]
5 Hb_001343_120 0.158417417 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003992_050 0.1587746283 - - delta 9 desaturase, putative [Ricinus communis]
7 Hb_000169_070 0.1598552868 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
8 Hb_003397_030 0.1625294383 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
9 Hb_004218_050 0.1629206374 - - annexin [Manihot esculenta]
10 Hb_006583_030 0.1631810255 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
11 Hb_002540_060 0.1644276215 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
12 Hb_000110_240 0.165829516 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
13 Hb_000500_330 0.1707977563 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
14 Hb_002435_090 0.1708282707 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
15 Hb_001999_260 0.176183833 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
16 Hb_003121_010 0.1770453198 - - hypothetical protein POPTR_0018s09720g [Populus trichocarpa]
17 Hb_004855_070 0.177367304 - - PLASTID-SPECIFIC RIBOSOMAL protein 4 [Populus trichocarpa]
18 Hb_004846_230 0.178999172 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
19 Hb_001442_050 0.1796080881 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
20 Hb_000792_050 0.1812087166 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002986_140 Hb_002986_140 Hb_000028_150 Hb_000028_150 Hb_002986_140--Hb_000028_150 Hb_002942_120 Hb_002942_120 Hb_002986_140--Hb_002942_120 Hb_003638_040 Hb_003638_040 Hb_002986_140--Hb_003638_040 Hb_001343_120 Hb_001343_120 Hb_002986_140--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_002986_140--Hb_003992_050 Hb_000169_070 Hb_000169_070 Hb_002986_140--Hb_000169_070 Hb_002540_060 Hb_002540_060 Hb_000028_150--Hb_002540_060 Hb_000028_150--Hb_001343_120 Hb_002435_090 Hb_002435_090 Hb_000028_150--Hb_002435_090 Hb_001442_050 Hb_001442_050 Hb_000028_150--Hb_001442_050 Hb_000500_330 Hb_000500_330 Hb_000028_150--Hb_000500_330 Hb_004218_050 Hb_004218_050 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_002078_120 Hb_002078_120 Hb_003638_040--Hb_002078_120 Hb_003638_040--Hb_000028_150 Hb_000483_270 Hb_000483_270 Hb_003638_040--Hb_000483_270 Hb_007002_050 Hb_007002_050 Hb_003638_040--Hb_007002_050 Hb_002799_120 Hb_002799_120 Hb_003638_040--Hb_002799_120 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_001343_120--Hb_001975_050 Hb_000207_140 Hb_000207_140 Hb_001343_120--Hb_000207_140 Hb_001343_120--Hb_004218_050 Hb_001343_120--Hb_002540_060 Hb_003992_050--Hb_002435_090 Hb_003992_050--Hb_000207_140 Hb_003992_050--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_003992_050--Hb_140360_010 Hb_188739_010 Hb_188739_010 Hb_003992_050--Hb_188739_010 Hb_001386_090 Hb_001386_090 Hb_003992_050--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_000169_070--Hb_003397_030 Hb_000169_070--Hb_001386_090 Hb_006252_030 Hb_006252_030 Hb_000169_070--Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_000169_070--Hb_000322_040 Hb_003470_100 Hb_003470_100 Hb_000169_070--Hb_003470_100 Hb_004007_170 Hb_004007_170 Hb_000169_070--Hb_004007_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.369838 1.06572 12.1019 2.21539 0.210843 0.367875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.245684 0.120805 1.18089 0.713521 4.80477

CAGE analysis