Hb_003992_050

Information

Type -
Description -
Location Contig3992: 13261-15985
Sequence    

Annotation

kegg
ID rcu:RCOM_0900580
description delta 9 desaturase, putative (EC:1.14.19.1)
nr
ID XP_002517641.1
description delta 9 desaturase, putative [Ricinus communis]
swissprot
ID Q949X0
description Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2
trembl
ID B9RV72
description Delta 9 desaturase, putative OS=Ricinus communis GN=RCOM_0900580 PE=3 SV=1
Gene Ontology
ID GO:0016021
description palmitoyl-monogalactosyldiacylglycerol delta-7 chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39699: 13244-15987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003992_050 0.0 - - delta 9 desaturase, putative [Ricinus communis]
2 Hb_002435_090 0.1072991874 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_000207_140 0.1209966663 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
4 Hb_001975_050 0.1222639153 - - Tyrosine-specific transport protein, putative [Ricinus communis]
5 Hb_140360_010 0.1452743698 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
6 Hb_188739_010 0.1480503964 - - protein binding protein, putative [Ricinus communis]
7 Hb_001386_090 0.1481102928 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
8 Hb_001638_310 0.1482313021 - - ribonucleoprotein, chloroplast, putative [Ricinus communis]
9 Hb_000637_070 0.1490402413 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
10 Hb_027654_070 0.1520830779 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001343_120 0.1568647806 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000816_210 0.1580663391 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
13 Hb_002999_030 0.1581363721 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
14 Hb_006487_040 0.1582013588 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
15 Hb_002986_140 0.1587746283 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
16 Hb_000169_070 0.1594940184 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
17 Hb_000035_210 0.1599395922 - - PREDICTED: BTB/POZ domain-containing protein NPY1 [Jatropha curcas]
18 Hb_000438_130 0.159958916 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
19 Hb_004517_030 0.160724534 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000347_140 0.1611340858 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003992_050 Hb_003992_050 Hb_002435_090 Hb_002435_090 Hb_003992_050--Hb_002435_090 Hb_000207_140 Hb_000207_140 Hb_003992_050--Hb_000207_140 Hb_001975_050 Hb_001975_050 Hb_003992_050--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_003992_050--Hb_140360_010 Hb_188739_010 Hb_188739_010 Hb_003992_050--Hb_188739_010 Hb_001386_090 Hb_001386_090 Hb_003992_050--Hb_001386_090 Hb_002435_090--Hb_000207_140 Hb_002435_090--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002435_090--Hb_001343_120 Hb_002435_090--Hb_001975_050 Hb_002435_090--Hb_140360_010 Hb_000207_140--Hb_188739_010 Hb_000207_140--Hb_001343_120 Hb_000816_210 Hb_000816_210 Hb_000207_140--Hb_000816_210 Hb_000207_140--Hb_001975_050 Hb_001975_050--Hb_188739_010 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_001975_050--Hb_001343_120 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_001519_170 Hb_001519_170 Hb_140360_010--Hb_001519_170 Hb_000574_470 Hb_000574_470 Hb_140360_010--Hb_000574_470 Hb_172632_060 Hb_172632_060 Hb_140360_010--Hb_172632_060 Hb_001711_060 Hb_001711_060 Hb_140360_010--Hb_001711_060 Hb_001366_350 Hb_001366_350 Hb_140360_010--Hb_001366_350 Hb_000347_140 Hb_000347_140 Hb_188739_010--Hb_000347_140 Hb_000300_710 Hb_000300_710 Hb_188739_010--Hb_000300_710 Hb_188739_010--Hb_001343_120 Hb_003397_030 Hb_003397_030 Hb_001386_090--Hb_003397_030 Hb_000438_130 Hb_000438_130 Hb_001386_090--Hb_000438_130 Hb_001386_090--Hb_001711_060 Hb_000169_070 Hb_000169_070 Hb_001386_090--Hb_000169_070 Hb_004517_030 Hb_004517_030 Hb_001386_090--Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_001386_090--Hb_000392_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21044 2.30031 19.9195 2.50776 2.18004 1.295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.454658 0.804726 1.66807 0.822975 6.92982

CAGE analysis