Hb_001519_170

Information

Type -
Description -
Location Contig1519: 184146-200296
Sequence    

Annotation

kegg
ID rcu:RCOM_0816870
description Glutathione-regulated potassium-efflux system protein kefB, putative
nr
ID XP_012074556.1
description PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9M0Z3
description K(+) efflux antiporter 3, chloroplastic OS=Arabidopsis thaliana GN=KEA3 PE=2 SV=2
trembl
ID A0A067KII6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09904 PE=4 SV=1
Gene Ontology
ID GO:0016021
description k(+) efflux antiporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12939: 184341-187735 , PASA_asmbl_12940: 187736-200367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001519_170 0.0 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
2 Hb_001711_060 0.0852856357 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
3 Hb_140360_010 0.0867850568 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
4 Hb_000146_030 0.1099367685 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
5 Hb_000000_180 0.11143829 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
6 Hb_001366_350 0.1144912271 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
7 Hb_001386_090 0.1178998811 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
8 Hb_000574_470 0.1274898248 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_172632_060 0.1288955862 - - PREDICTED: uncharacterized protein LOC105646135 isoform X1 [Jatropha curcas]
10 Hb_003038_100 0.1398082735 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
11 Hb_012545_040 0.1418067467 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000431_150 0.1422416257 - - ribosomal protein L27, putative [Ricinus communis]
13 Hb_007217_010 0.1427367774 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
14 Hb_000392_450 0.1433831148 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
15 Hb_000438_130 0.1438325912 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
16 Hb_000169_070 0.1447524745 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
17 Hb_000005_130 0.1451092089 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
18 Hb_011114_020 0.1457174712 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
19 Hb_003397_030 0.1463651292 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_005000_060 0.1467182134 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]

Gene co-expression network

sample Hb_001519_170 Hb_001519_170 Hb_001711_060 Hb_001711_060 Hb_001519_170--Hb_001711_060 Hb_140360_010 Hb_140360_010 Hb_001519_170--Hb_140360_010 Hb_000146_030 Hb_000146_030 Hb_001519_170--Hb_000146_030 Hb_000000_180 Hb_000000_180 Hb_001519_170--Hb_000000_180 Hb_001366_350 Hb_001366_350 Hb_001519_170--Hb_001366_350 Hb_001386_090 Hb_001386_090 Hb_001519_170--Hb_001386_090 Hb_001711_060--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_001711_060--Hb_003397_030 Hb_012653_030 Hb_012653_030 Hb_001711_060--Hb_012653_030 Hb_001711_060--Hb_000146_030 Hb_000438_130 Hb_000438_130 Hb_001711_060--Hb_000438_130 Hb_002435_090 Hb_002435_090 Hb_140360_010--Hb_002435_090 Hb_000574_470 Hb_000574_470 Hb_140360_010--Hb_000574_470 Hb_172632_060 Hb_172632_060 Hb_140360_010--Hb_172632_060 Hb_140360_010--Hb_001711_060 Hb_140360_010--Hb_001366_350 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_012545_040 Hb_012545_040 Hb_000000_180--Hb_012545_040 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_000000_180--Hb_001711_060 Hb_000000_180--Hb_004459_060 Hb_001366_350--Hb_000146_030 Hb_001366_350--Hb_001711_060 Hb_001366_350--Hb_004007_170 Hb_005488_160 Hb_005488_160 Hb_001366_350--Hb_005488_160 Hb_001366_350--Hb_011114_020 Hb_001386_090--Hb_003397_030 Hb_001386_090--Hb_000438_130 Hb_000169_070 Hb_000169_070 Hb_001386_090--Hb_000169_070 Hb_004517_030 Hb_004517_030 Hb_001386_090--Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_001386_090--Hb_000392_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.76537 8.51897 90.9106 13.9962 5.66209 5.21938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.66737 19.2258 6.50146 4.27575 48.6848

CAGE analysis