Hb_002435_090

Information

Type -
Description -
Location Contig2435: 119261-126284
Sequence    

Annotation

kegg
ID pop:POPTR_0016s10670g
description POPTRDRAFT_735580; Membrane-associated 30 kDa family protein
nr
ID XP_012065082.1
description PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID Q03943
description Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1
trembl
ID A0A067L7A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05739 PE=4 SV=1
Gene Ontology
ID GO:0009508
description membrane-associated 30 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25438: 119329-126243
cDNA
(Sanger)
(ID:Location)		 040_J04.ab1: 122599-126243 , 042_C13.ab1: 124268-126243

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002435_090 0.0 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_000207_140 0.0569093275 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
3 Hb_188739_010 0.0967088365 - - protein binding protein, putative [Ricinus communis]
4 Hb_001343_120 0.1035147507 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003992_050 0.1072991874 - - delta 9 desaturase, putative [Ricinus communis]
6 Hb_001975_050 0.1118001136 - - Tyrosine-specific transport protein, putative [Ricinus communis]
7 Hb_140360_010 0.1172372481 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
8 Hb_000028_150 0.1332183582 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
9 Hb_000169_070 0.133604314 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
10 Hb_000637_070 0.1353191875 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
11 Hb_000816_210 0.1363897709 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
12 Hb_000347_140 0.1407444366 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_004517_030 0.1445137591 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002794_040 0.1470036319 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
15 Hb_003397_030 0.1470975229 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
16 Hb_002540_060 0.1477259963 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
17 Hb_004846_230 0.148770914 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
18 Hb_003470_100 0.1504120331 - - protein binding protein, putative [Ricinus communis]
19 Hb_001386_090 0.1522461933 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
20 Hb_001519_170 0.1563914914 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002435_090 Hb_002435_090 Hb_000207_140 Hb_000207_140 Hb_002435_090--Hb_000207_140 Hb_188739_010 Hb_188739_010 Hb_002435_090--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002435_090--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_002435_090--Hb_003992_050 Hb_001975_050 Hb_001975_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_000207_140--Hb_188739_010 Hb_000207_140--Hb_001343_120 Hb_000207_140--Hb_003992_050 Hb_000816_210 Hb_000816_210 Hb_000207_140--Hb_000816_210 Hb_000207_140--Hb_001975_050 Hb_188739_010--Hb_001975_050 Hb_000347_140 Hb_000347_140 Hb_188739_010--Hb_000347_140 Hb_000300_710 Hb_000300_710 Hb_188739_010--Hb_000300_710 Hb_188739_010--Hb_001343_120 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_001975_050 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060 Hb_003992_050--Hb_001975_050 Hb_003992_050--Hb_140360_010 Hb_003992_050--Hb_188739_010 Hb_001386_090 Hb_001386_090 Hb_003992_050--Hb_001386_090 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_001519_170 Hb_001519_170 Hb_140360_010--Hb_001519_170 Hb_000574_470 Hb_000574_470 Hb_140360_010--Hb_000574_470 Hb_172632_060 Hb_172632_060 Hb_140360_010--Hb_172632_060 Hb_001711_060 Hb_001711_060 Hb_140360_010--Hb_001711_060 Hb_001366_350 Hb_001366_350 Hb_140360_010--Hb_001366_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.93014 5.5257 58.9872 6.30435 3.35683 2.78232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.27006 3.22518 1.39824 2.98204 19.4012

CAGE analysis