Hb_004218_050

Information

Type -
Description -
Location Contig4218: 55186-58079
Sequence    

Annotation

kegg
ID rcu:RCOM_1453030
description annexin, putative
nr
ID AJJ90392.1
description annexin [Manihot esculenta]
swissprot
ID Q9SE45
description Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=2
trembl
ID A0A0C4ZQZ4
description Ann7 protein OS=Manihot esculenta GN=Ann7 PE=2 SV=1
Gene Ontology
ID GO:0005773
description annexin d3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41652: 55235-57906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_050 0.0 - - annexin [Manihot esculenta]
2 Hb_002942_120 0.1055875261 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
3 Hb_024973_020 0.1077123899 - - Protein regulator of cytokinesis, putative [Ricinus communis]
4 Hb_010683_070 0.109633231 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
5 Hb_012653_010 0.1159697455 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
6 Hb_001343_120 0.120432437 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004223_170 0.1334872342 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
8 Hb_012055_080 0.1351370933 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
9 Hb_003935_090 0.1366645031 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
10 Hb_000110_240 0.1379501299 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
11 Hb_007943_180 0.1380834308 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
12 Hb_008643_220 0.138171681 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
13 Hb_007952_050 0.1398325994 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
14 Hb_004846_230 0.141203053 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
15 Hb_001579_190 0.1442147515 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000020_080 0.1508366247 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
17 Hb_000042_390 0.151162476 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
18 Hb_001761_010 0.1537376552 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
19 Hb_038044_010 0.1550046801 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
20 Hb_021346_050 0.155118194 - - xylulose kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004218_050 Hb_004218_050 Hb_002942_120 Hb_002942_120 Hb_004218_050--Hb_002942_120 Hb_024973_020 Hb_024973_020 Hb_004218_050--Hb_024973_020 Hb_010683_070 Hb_010683_070 Hb_004218_050--Hb_010683_070 Hb_012653_010 Hb_012653_010 Hb_004218_050--Hb_012653_010 Hb_001343_120 Hb_001343_120 Hb_004218_050--Hb_001343_120 Hb_004223_170 Hb_004223_170 Hb_004218_050--Hb_004223_170 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_005527_060 Hb_005527_060 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_024973_020--Hb_012653_010 Hb_024973_020--Hb_038044_010 Hb_001501_070 Hb_001501_070 Hb_024973_020--Hb_001501_070 Hb_008406_100 Hb_008406_100 Hb_024973_020--Hb_008406_100 Hb_001761_010 Hb_001761_010 Hb_024973_020--Hb_001761_010 Hb_010683_070--Hb_004223_170 Hb_001579_190 Hb_001579_190 Hb_010683_070--Hb_001579_190 Hb_007952_050 Hb_007952_050 Hb_010683_070--Hb_007952_050 Hb_010863_030 Hb_010863_030 Hb_010683_070--Hb_010863_030 Hb_007101_270 Hb_007101_270 Hb_010683_070--Hb_007101_270 Hb_012653_010--Hb_001343_120 Hb_003935_090 Hb_003935_090 Hb_012653_010--Hb_003935_090 Hb_000042_390 Hb_000042_390 Hb_012653_010--Hb_000042_390 Hb_001536_020 Hb_001536_020 Hb_012653_010--Hb_001536_020 Hb_001343_120--Hb_000042_390 Hb_002435_090 Hb_002435_090 Hb_001343_120--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_001343_120--Hb_001975_050 Hb_000207_140 Hb_000207_140 Hb_001343_120--Hb_000207_140 Hb_002540_060 Hb_002540_060 Hb_001343_120--Hb_002540_060 Hb_008643_220 Hb_008643_220 Hb_004223_170--Hb_008643_220 Hb_002170_060 Hb_002170_060 Hb_004223_170--Hb_002170_060 Hb_007313_030 Hb_007313_030 Hb_004223_170--Hb_007313_030 Hb_001269_060 Hb_001269_060 Hb_004223_170--Hb_001269_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68715 5.64468 66.6211 15.1757 2.14719 2.66534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.980114 0.505172 0.896707 7.69126 16.0827

CAGE analysis