Hb_001536_020

Information

Type transcription factor
Description TF Family: GRF
Location Contig1536: 15486-18693
Sequence    

Annotation

kegg
ID tcc:TCM_034655
description Growth-regulating factor 1
nr
ID XP_012068389.1
description PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
swissprot
ID Q6AWY3
description Growth-regulating factor 6 OS=Oryza sativa subsp. japonica GN=GRF6 PE=2 SV=2
trembl
ID A0A067KZH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15989 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13221: 15239-18862 , PASA_asmbl_13222: 16408-18830
cDNA
(Sanger)
(ID:Location)		 006_L07.ab1: 15265-15806 , 015_G11.ab1: 15391-15805

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001536_020 0.0 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
2 Hb_000042_390 0.1280751427 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
3 Hb_001347_030 0.1314832996 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000753_170 0.1421594225 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010863_030 0.1430096571 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
6 Hb_012653_010 0.1469041585 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
7 Hb_173029_030 0.1488268403 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007574_020 0.1502106516 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
9 Hb_003095_100 0.1516052019 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010683_070 0.1516088132 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
11 Hb_003935_090 0.1581701023 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
12 Hb_000343_020 0.1594868759 - - PREDICTED: putative Peroxidase 48 [Jatropha curcas]
13 Hb_024973_020 0.1626720322 - - Protein regulator of cytokinesis, putative [Ricinus communis]
14 Hb_003020_190 0.1736876207 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
15 Hb_001862_050 0.1748502303 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
16 Hb_004218_050 0.17508378 - - annexin [Manihot esculenta]
17 Hb_001755_040 0.176064215 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
18 Hb_001761_010 0.1777017772 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
19 Hb_002897_010 0.1789476476 - - PREDICTED: probable inactive receptor kinase At5g58300 [Jatropha curcas]
20 Hb_002874_120 0.1831635835 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_001536_020 Hb_001536_020 Hb_000042_390 Hb_000042_390 Hb_001536_020--Hb_000042_390 Hb_001347_030 Hb_001347_030 Hb_001536_020--Hb_001347_030 Hb_000753_170 Hb_000753_170 Hb_001536_020--Hb_000753_170 Hb_010863_030 Hb_010863_030 Hb_001536_020--Hb_010863_030 Hb_012653_010 Hb_012653_010 Hb_001536_020--Hb_012653_010 Hb_173029_030 Hb_173029_030 Hb_001536_020--Hb_173029_030 Hb_001343_120 Hb_001343_120 Hb_000042_390--Hb_001343_120 Hb_000042_390--Hb_001347_030 Hb_000042_390--Hb_012653_010 Hb_107078_010 Hb_107078_010 Hb_000042_390--Hb_107078_010 Hb_000494_010 Hb_000494_010 Hb_000042_390--Hb_000494_010 Hb_001347_030--Hb_010863_030 Hb_000061_430 Hb_000061_430 Hb_001347_030--Hb_000061_430 Hb_029432_010 Hb_029432_010 Hb_001347_030--Hb_029432_010 Hb_007574_020 Hb_007574_020 Hb_001347_030--Hb_007574_020 Hb_001755_040 Hb_001755_040 Hb_000753_170--Hb_001755_040 Hb_004129_060 Hb_004129_060 Hb_000753_170--Hb_004129_060 Hb_001085_160 Hb_001085_160 Hb_000753_170--Hb_001085_160 Hb_000753_170--Hb_007574_020 Hb_000343_020 Hb_000343_020 Hb_000753_170--Hb_000343_020 Hb_010683_030 Hb_010683_030 Hb_010863_030--Hb_010683_030 Hb_000320_310 Hb_000320_310 Hb_010863_030--Hb_000320_310 Hb_005000_010 Hb_005000_010 Hb_010863_030--Hb_005000_010 Hb_002897_010 Hb_002897_010 Hb_010863_030--Hb_002897_010 Hb_010683_070 Hb_010683_070 Hb_010863_030--Hb_010683_070 Hb_024973_020 Hb_024973_020 Hb_012653_010--Hb_024973_020 Hb_004218_050 Hb_004218_050 Hb_012653_010--Hb_004218_050 Hb_012653_010--Hb_001343_120 Hb_003935_090 Hb_003935_090 Hb_012653_010--Hb_003935_090 Hb_001638_120 Hb_001638_120 Hb_173029_030--Hb_001638_120 Hb_022092_040 Hb_022092_040 Hb_173029_030--Hb_022092_040 Hb_000308_010 Hb_000308_010 Hb_173029_030--Hb_000308_010 Hb_173029_030--Hb_000042_390 Hb_008250_020 Hb_008250_020 Hb_173029_030--Hb_008250_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02189 0.792315 7.05194 2.44333 0.115781 0.175002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0465836 0.0549794 0 0.619913 1.31572

CAGE analysis