Hb_001347_030

Information

Type -
Description -
Location Contig1347: 21778-22913
Sequence    

Annotation

kegg
ID rcu:RCOM_1064640
description ubiquitin-protein ligase, putative
nr
ID XP_002521473.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q8GWV5
description U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
trembl
ID B9S654
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1064640 PE=4 SV=1
Gene Ontology
ID GO:0016874
description u-box domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001347_030 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000042_390 0.1286490863 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
3 Hb_001536_020 0.1314832996 transcription factor TF Family: GRF PREDICTED: uncharacterized protein LOC105631006 [Jatropha curcas]
4 Hb_010863_030 0.1444082972 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
5 Hb_000061_430 0.1462859299 - - conserved hypothetical protein [Ricinus communis]
6 Hb_029432_010 0.1477923576 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_007574_020 0.171312086 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
8 Hb_010683_030 0.1724990871 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010288_030 0.1767557708 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
10 Hb_003935_090 0.1808544178 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
11 Hb_012653_010 0.1815461225 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
12 Hb_136441_010 0.1855175196 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
13 Hb_004447_050 0.1871539826 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
14 Hb_001343_120 0.1891802473 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011033_010 0.1908330171 - - ATP-binding cassette transporter, putative [Ricinus communis]
16 Hb_059567_010 0.1929192399 - - PREDICTED: transcription factor PAR2-like [Jatropha curcas]
17 Hb_001266_150 0.1942997392 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
18 Hb_010683_070 0.196820349 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
19 Hb_000352_010 0.1991531961 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
20 Hb_004115_010 0.2002477016 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]

Gene co-expression network

sample Hb_001347_030 Hb_001347_030 Hb_000042_390 Hb_000042_390 Hb_001347_030--Hb_000042_390 Hb_001536_020 Hb_001536_020 Hb_001347_030--Hb_001536_020 Hb_010863_030 Hb_010863_030 Hb_001347_030--Hb_010863_030 Hb_000061_430 Hb_000061_430 Hb_001347_030--Hb_000061_430 Hb_029432_010 Hb_029432_010 Hb_001347_030--Hb_029432_010 Hb_007574_020 Hb_007574_020 Hb_001347_030--Hb_007574_020 Hb_001343_120 Hb_001343_120 Hb_000042_390--Hb_001343_120 Hb_000042_390--Hb_001536_020 Hb_012653_010 Hb_012653_010 Hb_000042_390--Hb_012653_010 Hb_107078_010 Hb_107078_010 Hb_000042_390--Hb_107078_010 Hb_000494_010 Hb_000494_010 Hb_000042_390--Hb_000494_010 Hb_000753_170 Hb_000753_170 Hb_001536_020--Hb_000753_170 Hb_001536_020--Hb_010863_030 Hb_001536_020--Hb_012653_010 Hb_173029_030 Hb_173029_030 Hb_001536_020--Hb_173029_030 Hb_010683_030 Hb_010683_030 Hb_010863_030--Hb_010683_030 Hb_000320_310 Hb_000320_310 Hb_010863_030--Hb_000320_310 Hb_005000_010 Hb_005000_010 Hb_010863_030--Hb_005000_010 Hb_002897_010 Hb_002897_010 Hb_010863_030--Hb_002897_010 Hb_010683_070 Hb_010683_070 Hb_010863_030--Hb_010683_070 Hb_011033_010 Hb_011033_010 Hb_000061_430--Hb_011033_010 Hb_136441_010 Hb_136441_010 Hb_000061_430--Hb_136441_010 Hb_005890_020 Hb_005890_020 Hb_000061_430--Hb_005890_020 Hb_019973_010 Hb_019973_010 Hb_000061_430--Hb_019973_010 Hb_010288_030 Hb_010288_030 Hb_000061_430--Hb_010288_030 Hb_029432_010--Hb_000061_430 Hb_029432_010--Hb_136441_010 Hb_005357_140 Hb_005357_140 Hb_029432_010--Hb_005357_140 Hb_062773_010 Hb_062773_010 Hb_029432_010--Hb_062773_010 Hb_000139_040 Hb_000139_040 Hb_029432_010--Hb_000139_040 Hb_003935_090 Hb_003935_090 Hb_007574_020--Hb_003935_090 Hb_004109_100 Hb_004109_100 Hb_007574_020--Hb_004109_100 Hb_002232_310 Hb_002232_310 Hb_007574_020--Hb_002232_310 Hb_005568_140 Hb_005568_140 Hb_007574_020--Hb_005568_140 Hb_001755_040 Hb_001755_040 Hb_007574_020--Hb_001755_040 Hb_002243_030 Hb_002243_030 Hb_007574_020--Hb_002243_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.46095 0.221602 2.77902 0.937539 0.0401919 0.099013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0775816 0.870368

CAGE analysis