Hb_011033_010

Information

Type -
Description -
Location Contig11033: 4247-7224
Sequence    

Annotation

kegg
ID rcu:RCOM_1216390
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002529514.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q8RWI9
description ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2
trembl
ID B9SU45
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1216390 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011033_010 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_010288_030 0.1177756663 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
3 Hb_071674_010 0.1269941775 transcription factor TF Family: WRKY hypothetical protein POPTR_0006s10950g [Populus trichocarpa]
4 Hb_000061_430 0.1276085727 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005890_020 0.1296131059 - - putative plant disease resistance family protein [Populus trichocarpa]
6 Hb_012055_080 0.1329316674 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
7 Hb_018133_070 0.1361561244 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
8 Hb_019973_010 0.1361961578 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
9 Hb_004115_010 0.1364570406 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
10 Hb_000056_030 0.1413099421 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
11 Hb_003020_190 0.1450042238 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
12 Hb_000925_150 0.1494534207 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
13 Hb_000352_010 0.1496612495 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
14 Hb_000438_160 0.1524051713 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006133_020 0.1535724139 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
16 Hb_001862_050 0.1536128753 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
17 Hb_004093_030 0.1556690614 - - hypothetical protein RCOM_1406750 [Ricinus communis]
18 Hb_000120_340 0.1557029816 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_000479_020 0.1564557024 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007574_020 0.1573225222 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]

Gene co-expression network

sample Hb_011033_010 Hb_011033_010 Hb_010288_030 Hb_010288_030 Hb_011033_010--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_011033_010--Hb_071674_010 Hb_000061_430 Hb_000061_430 Hb_011033_010--Hb_000061_430 Hb_005890_020 Hb_005890_020 Hb_011033_010--Hb_005890_020 Hb_012055_080 Hb_012055_080 Hb_011033_010--Hb_012055_080 Hb_018133_070 Hb_018133_070 Hb_011033_010--Hb_018133_070 Hb_010288_030--Hb_071674_010 Hb_003020_190 Hb_003020_190 Hb_010288_030--Hb_003020_190 Hb_000352_010 Hb_000352_010 Hb_010288_030--Hb_000352_010 Hb_001755_040 Hb_001755_040 Hb_010288_030--Hb_001755_040 Hb_007574_020 Hb_007574_020 Hb_010288_030--Hb_007574_020 Hb_071674_010--Hb_003020_190 Hb_000349_250 Hb_000349_250 Hb_071674_010--Hb_000349_250 Hb_000027_160 Hb_000027_160 Hb_071674_010--Hb_000027_160 Hb_000991_030 Hb_000991_030 Hb_071674_010--Hb_000991_030 Hb_001269_060 Hb_001269_060 Hb_071674_010--Hb_001269_060 Hb_136441_010 Hb_136441_010 Hb_000061_430--Hb_136441_010 Hb_000061_430--Hb_005890_020 Hb_001347_030 Hb_001347_030 Hb_000061_430--Hb_001347_030 Hb_019973_010 Hb_019973_010 Hb_000061_430--Hb_019973_010 Hb_000061_430--Hb_010288_030 Hb_005496_040 Hb_005496_040 Hb_005890_020--Hb_005496_040 Hb_001080_190 Hb_001080_190 Hb_005890_020--Hb_001080_190 Hb_002301_400 Hb_002301_400 Hb_005890_020--Hb_002301_400 Hb_001439_080 Hb_001439_080 Hb_005890_020--Hb_001439_080 Hb_017383_010 Hb_017383_010 Hb_005890_020--Hb_017383_010 Hb_000103_220 Hb_000103_220 Hb_005890_020--Hb_000103_220 Hb_003935_090 Hb_003935_090 Hb_012055_080--Hb_003935_090 Hb_007952_050 Hb_007952_050 Hb_012055_080--Hb_007952_050 Hb_012055_080--Hb_007574_020 Hb_004218_050 Hb_004218_050 Hb_012055_080--Hb_004218_050 Hb_000925_150 Hb_000925_150 Hb_012055_080--Hb_000925_150 Hb_006133_020 Hb_006133_020 Hb_018133_070--Hb_006133_020 Hb_010683_030 Hb_010683_030 Hb_018133_070--Hb_010683_030 Hb_000032_360 Hb_000032_360 Hb_018133_070--Hb_000032_360 Hb_018133_070--Hb_000925_150 Hb_018133_070--Hb_003020_190 Hb_047659_010 Hb_047659_010 Hb_018133_070--Hb_047659_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0483993 0.13217 1.31663 0.732236 0.065855 0.017907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0331007 0.0347024 0.405798

CAGE analysis