Hb_000032_360

Information

Type -
Description -
Location Contig32: 287344-288042
Sequence    

Annotation

kegg
ID rcu:RCOM_1692090
description hypothetical protein
nr
ID XP_012086717.1
description PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
swissprot
ID Q9T0A4
description NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana GN=ndhS PE=1 SV=1
trembl
ID B9RCT3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692090 PE=4 SV=1
Gene Ontology
ID GO:0009534
description nad h-quinone oxidoreductase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_360 0.0 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
2 Hb_000130_130 0.1043623201 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
3 Hb_004447_050 0.1137273326 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
4 Hb_003581_230 0.1222488437 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
5 Hb_001141_350 0.1246472375 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
6 Hb_018133_070 0.1274660491 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
7 Hb_001221_060 0.1350292146 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
8 Hb_004220_010 0.1401823183 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
9 Hb_000056_030 0.1402011887 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
10 Hb_010683_030 0.1405554243 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005890_020 0.1442282811 - - putative plant disease resistance family protein [Populus trichocarpa]
12 Hb_000622_050 0.1469813259 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004531_170 0.1543543628 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
14 Hb_000185_130 0.1554683408 - - UBX domain-containing protein 8-B, putative [Ricinus communis]
15 Hb_000465_020 0.155487497 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
16 Hb_006133_020 0.156095578 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
17 Hb_000061_430 0.1567151767 - - conserved hypothetical protein [Ricinus communis]
18 Hb_047659_010 0.157395694 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000322_030 0.1588176688 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
20 Hb_011033_010 0.1608548234 - - ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000032_360 Hb_000032_360 Hb_000130_130 Hb_000130_130 Hb_000032_360--Hb_000130_130 Hb_004447_050 Hb_004447_050 Hb_000032_360--Hb_004447_050 Hb_003581_230 Hb_003581_230 Hb_000032_360--Hb_003581_230 Hb_001141_350 Hb_001141_350 Hb_000032_360--Hb_001141_350 Hb_018133_070 Hb_018133_070 Hb_000032_360--Hb_018133_070 Hb_001221_060 Hb_001221_060 Hb_000032_360--Hb_001221_060 Hb_008511_040 Hb_008511_040 Hb_000130_130--Hb_008511_040 Hb_000322_030 Hb_000322_030 Hb_000130_130--Hb_000322_030 Hb_006133_020 Hb_006133_020 Hb_000130_130--Hb_006133_020 Hb_000130_130--Hb_018133_070 Hb_000984_150 Hb_000984_150 Hb_000130_130--Hb_000984_150 Hb_010683_030 Hb_010683_030 Hb_004447_050--Hb_010683_030 Hb_004447_050--Hb_001141_350 Hb_007479_010 Hb_007479_010 Hb_004447_050--Hb_007479_010 Hb_004855_070 Hb_004855_070 Hb_004447_050--Hb_004855_070 Hb_004447_050--Hb_000130_130 Hb_004220_010 Hb_004220_010 Hb_003581_230--Hb_004220_010 Hb_029576_060 Hb_029576_060 Hb_003581_230--Hb_029576_060 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_000976_400 Hb_000976_400 Hb_003581_230--Hb_000976_400 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_000836_090 Hb_000836_090 Hb_001141_350--Hb_000836_090 Hb_000062_130 Hb_000062_130 Hb_001141_350--Hb_000062_130 Hb_001936_190 Hb_001936_190 Hb_001141_350--Hb_001936_190 Hb_000645_260 Hb_000645_260 Hb_001141_350--Hb_000645_260 Hb_000181_330 Hb_000181_330 Hb_001141_350--Hb_000181_330 Hb_000465_020 Hb_000465_020 Hb_001141_350--Hb_000465_020 Hb_018133_070--Hb_006133_020 Hb_018133_070--Hb_010683_030 Hb_000925_150 Hb_000925_150 Hb_018133_070--Hb_000925_150 Hb_003020_190 Hb_003020_190 Hb_018133_070--Hb_003020_190 Hb_047659_010 Hb_047659_010 Hb_018133_070--Hb_047659_010 Hb_128196_010 Hb_128196_010 Hb_001221_060--Hb_128196_010 Hb_002301_400 Hb_002301_400 Hb_001221_060--Hb_002301_400 Hb_001221_060--Hb_000465_020 Hb_070498_010 Hb_070498_010 Hb_001221_060--Hb_070498_010 Hb_005568_020 Hb_005568_020 Hb_001221_060--Hb_005568_020 Hb_001221_060--Hb_008511_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.27645 24.0553 122.525 96.0613 10.4794 8.6052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70239 0.637292 0.454785 2.48941 77.376

CAGE analysis