Hb_000465_020

Information

Type -
Description -
Location Contig465: 13070-15933
Sequence    

Annotation

kegg
ID rcu:RCOM_1388540
description hypothetical protein
nr
ID XP_012070008.1
description PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5W0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03416 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43937: 13115-15991 , PASA_asmbl_43938: 13074-15991 , PASA_asmbl_43939: 13464-13595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_020 0.0 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
2 Hb_002078_390 0.0911439387 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
3 Hb_001221_060 0.1043998855 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
4 Hb_000836_090 0.1066045987 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
5 Hb_033006_020 0.1073852071 - - Aspartate aminotransferase, putative [Ricinus communis]
6 Hb_005568_020 0.1095709785 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
7 Hb_128196_010 0.1148927868 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002311_280 0.1157109803 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_001141_350 0.1172221566 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
10 Hb_028008_040 0.1184941999 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007130_020 0.1187031504 - - -
12 Hb_003266_090 0.1243433849 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
13 Hb_022092_110 0.1251984365 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
14 Hb_006922_020 0.1282440262 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
15 Hb_000645_260 0.1307756761 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
16 Hb_000243_060 0.1316662413 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
17 Hb_000049_280 0.1340337453 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
18 Hb_169893_010 0.1341601075 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
19 Hb_000905_100 0.1366621618 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
20 Hb_000996_070 0.1367377449 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000465_020 Hb_000465_020 Hb_002078_390 Hb_002078_390 Hb_000465_020--Hb_002078_390 Hb_001221_060 Hb_001221_060 Hb_000465_020--Hb_001221_060 Hb_000836_090 Hb_000836_090 Hb_000465_020--Hb_000836_090 Hb_033006_020 Hb_033006_020 Hb_000465_020--Hb_033006_020 Hb_005568_020 Hb_005568_020 Hb_000465_020--Hb_005568_020 Hb_128196_010 Hb_128196_010 Hb_000465_020--Hb_128196_010 Hb_002078_390--Hb_005568_020 Hb_028008_040 Hb_028008_040 Hb_002078_390--Hb_028008_040 Hb_000243_060 Hb_000243_060 Hb_002078_390--Hb_000243_060 Hb_000417_050 Hb_000417_050 Hb_002078_390--Hb_000417_050 Hb_002311_280 Hb_002311_280 Hb_002078_390--Hb_002311_280 Hb_001221_060--Hb_128196_010 Hb_002301_400 Hb_002301_400 Hb_001221_060--Hb_002301_400 Hb_070498_010 Hb_070498_010 Hb_001221_060--Hb_070498_010 Hb_001221_060--Hb_005568_020 Hb_008511_040 Hb_008511_040 Hb_001221_060--Hb_008511_040 Hb_000836_090--Hb_033006_020 Hb_002053_180 Hb_002053_180 Hb_000836_090--Hb_002053_180 Hb_007130_020 Hb_007130_020 Hb_000836_090--Hb_007130_020 Hb_000905_100 Hb_000905_100 Hb_000836_090--Hb_000905_100 Hb_000002_370 Hb_000002_370 Hb_000836_090--Hb_000002_370 Hb_000199_040 Hb_000199_040 Hb_000836_090--Hb_000199_040 Hb_000645_260 Hb_000645_260 Hb_033006_020--Hb_000645_260 Hb_033006_020--Hb_002311_280 Hb_001377_120 Hb_001377_120 Hb_033006_020--Hb_001377_120 Hb_033006_020--Hb_007130_020 Hb_000735_060 Hb_000735_060 Hb_005568_020--Hb_000735_060 Hb_003606_050 Hb_003606_050 Hb_005568_020--Hb_003606_050 Hb_000008_200 Hb_000008_200 Hb_005568_020--Hb_000008_200 Hb_005568_020--Hb_128196_010 Hb_000207_350 Hb_000207_350 Hb_005568_020--Hb_000207_350 Hb_128196_010--Hb_070498_010 Hb_128196_010--Hb_002301_400 Hb_001157_050 Hb_001157_050 Hb_128196_010--Hb_001157_050 Hb_012404_020 Hb_012404_020 Hb_128196_010--Hb_012404_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0549471 7.7791 24.1405 20.8267 0.509948 0.935498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.14348 0.197484 0.165493 2.43181 14.3323

CAGE analysis