Hb_033006_020

Information

Type -
Description -
Location Contig33006: 23010-28889
Sequence    

Annotation

kegg
ID rcu:RCOM_0399800
description Aspartate aminotransferase, putative (EC:2.6.1.1)
nr
ID XP_002534257.1
description Aspartate aminotransferase, putative [Ricinus communis]
swissprot
ID Q9ZQI7
description Aminotransferase ALD1 OS=Arabidopsis thaliana GN=ALD1 PE=1 SV=2
trembl
ID B9T7N8
description Aspartate aminotransferase, putative OS=Ricinus communis GN=RCOM_0399800 PE=4 SV=1
Gene Ontology
ID GO:0004069
description probable ll-diaminopimelate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34709: 22556-29021 , PASA_asmbl_34710: 22765-23222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033006_020 0.0 - - Aspartate aminotransferase, putative [Ricinus communis]
2 Hb_000836_090 0.0779046711 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
3 Hb_000645_260 0.0923489535 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
4 Hb_002311_280 0.0936906857 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
5 Hb_001377_120 0.0975093142 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
6 Hb_007130_020 0.1033212541 - - -
7 Hb_000465_020 0.1073852071 - - PREDICTED: uncharacterized protein LOC105632280 [Jatropha curcas]
8 Hb_014720_140 0.1128597761 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
9 Hb_006922_020 0.1134388352 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
10 Hb_000905_100 0.1148482568 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like isoform X1 [Jatropha curcas]
11 Hb_003531_050 0.115606196 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
12 Hb_002053_180 0.1170972947 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
13 Hb_000567_330 0.117708323 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
14 Hb_000062_130 0.1178167383 - - cytochrome P450, putative [Ricinus communis]
15 Hb_015934_060 0.1211833035 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
16 Hb_000243_290 0.1216159803 - - plastidic aldolase family protein [Populus trichocarpa]
17 Hb_000103_370 0.1235609549 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
18 Hb_000049_280 0.1235886277 - - PREDICTED: ribokinase-like isoform X4 [Jatropha curcas]
19 Hb_001269_060 0.1242295873 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
20 Hb_000181_330 0.1245498883 - - ubiquitin ligase protein cop1, putative [Ricinus communis]

Gene co-expression network

sample Hb_033006_020 Hb_033006_020 Hb_000836_090 Hb_000836_090 Hb_033006_020--Hb_000836_090 Hb_000645_260 Hb_000645_260 Hb_033006_020--Hb_000645_260 Hb_002311_280 Hb_002311_280 Hb_033006_020--Hb_002311_280 Hb_001377_120 Hb_001377_120 Hb_033006_020--Hb_001377_120 Hb_007130_020 Hb_007130_020 Hb_033006_020--Hb_007130_020 Hb_000465_020 Hb_000465_020 Hb_033006_020--Hb_000465_020 Hb_002053_180 Hb_002053_180 Hb_000836_090--Hb_002053_180 Hb_000836_090--Hb_007130_020 Hb_000905_100 Hb_000905_100 Hb_000836_090--Hb_000905_100 Hb_000002_370 Hb_000002_370 Hb_000836_090--Hb_000002_370 Hb_000199_040 Hb_000199_040 Hb_000836_090--Hb_000199_040 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_001269_060 Hb_001269_060 Hb_000645_260--Hb_001269_060 Hb_014720_140 Hb_014720_140 Hb_000645_260--Hb_014720_140 Hb_000302_360 Hb_000302_360 Hb_000645_260--Hb_000302_360 Hb_000645_260--Hb_001377_120 Hb_002311_280--Hb_007130_020 Hb_022092_110 Hb_022092_110 Hb_002311_280--Hb_022092_110 Hb_003266_090 Hb_003266_090 Hb_002311_280--Hb_003266_090 Hb_044653_050 Hb_044653_050 Hb_002311_280--Hb_044653_050 Hb_000181_330 Hb_000181_330 Hb_002311_280--Hb_000181_330 Hb_001377_120--Hb_001269_060 Hb_121313_010 Hb_121313_010 Hb_001377_120--Hb_121313_010 Hb_001377_120--Hb_000302_360 Hb_006816_250 Hb_006816_250 Hb_001377_120--Hb_006816_250 Hb_007130_020--Hb_044653_050 Hb_006922_020 Hb_006922_020 Hb_007130_020--Hb_006922_020 Hb_004228_070 Hb_004228_070 Hb_007130_020--Hb_004228_070 Hb_002078_390 Hb_002078_390 Hb_000465_020--Hb_002078_390 Hb_001221_060 Hb_001221_060 Hb_000465_020--Hb_001221_060 Hb_000465_020--Hb_000836_090 Hb_005568_020 Hb_005568_020 Hb_000465_020--Hb_005568_020 Hb_128196_010 Hb_128196_010 Hb_000465_020--Hb_128196_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0672496 2.33984 7.28185 4.86244 0.106991 0.0440717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108415 0.227431 0.159402 0.477498 3.90304

CAGE analysis