Hb_000982_100

Information

Type transcription factor
Description TF Family: bHLH
Location Contig982: 154831-162772
Sequence    

Annotation

kegg
ID rcu:RCOM_1722420
description Phytochrome-interacting factor, putative
nr
ID XP_012085171.1
description PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8GZM7
description Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
trembl
ID A0A067JUE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17586 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor pif1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64420: 154761-162768 , PASA_asmbl_64422: 157620-158997 , PASA_asmbl_64424: 154761-159200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_100 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor PIF1-like isoform X1 [Jatropha curcas]
2 Hb_000645_260 0.0866064609 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
3 Hb_004531_170 0.0953497105 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
4 Hb_002244_020 0.1031516057 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
5 Hb_000127_100 0.1160906079 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
6 Hb_000486_020 0.1163608051 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
7 Hb_004117_370 0.1170481645 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
8 Hb_012833_010 0.1192601821 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
9 Hb_010584_020 0.1195389758 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_002818_150 0.1200709722 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
11 Hb_010534_040 0.122432287 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
12 Hb_001936_190 0.1262897044 - - hypothetical protein JCGZ_17780 [Jatropha curcas]
13 Hb_014720_140 0.1266092093 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
14 Hb_015934_060 0.1266447388 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
15 Hb_001141_350 0.1268637801 - - hypothetical protein JCGZ_02174 [Jatropha curcas]
16 Hb_000313_250 0.1276370846 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
17 Hb_002890_160 0.1276814424 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
18 Hb_001942_010 0.1292950227 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
19 Hb_003680_060 0.1327455655 - - hypothetical protein VITISV_022322 [Vitis vinifera]
20 Hb_000020_090 0.1341072478 - - hypothetical protein JCGZ_09084 [Jatropha curcas]

Gene co-expression network

sample Hb_000982_100 Hb_000982_100 Hb_000645_260 Hb_000645_260 Hb_000982_100--Hb_000645_260 Hb_004531_170 Hb_004531_170 Hb_000982_100--Hb_004531_170 Hb_002244_020 Hb_002244_020 Hb_000982_100--Hb_002244_020 Hb_000127_100 Hb_000127_100 Hb_000982_100--Hb_000127_100 Hb_000486_020 Hb_000486_020 Hb_000982_100--Hb_000486_020 Hb_004117_370 Hb_004117_370 Hb_000982_100--Hb_004117_370 Hb_001269_060 Hb_001269_060 Hb_000645_260--Hb_001269_060 Hb_014720_140 Hb_014720_140 Hb_000645_260--Hb_014720_140 Hb_000302_360 Hb_000302_360 Hb_000645_260--Hb_000302_360 Hb_033006_020 Hb_033006_020 Hb_000645_260--Hb_033006_020 Hb_001377_120 Hb_001377_120 Hb_000645_260--Hb_001377_120 Hb_000622_050 Hb_000622_050 Hb_004531_170--Hb_000622_050 Hb_001936_190 Hb_001936_190 Hb_004531_170--Hb_001936_190 Hb_004531_170--Hb_004117_370 Hb_000012_330 Hb_000012_330 Hb_004531_170--Hb_000012_330 Hb_000181_330 Hb_000181_330 Hb_004531_170--Hb_000181_330 Hb_001942_010 Hb_001942_010 Hb_002244_020--Hb_001942_010 Hb_084303_010 Hb_084303_010 Hb_002244_020--Hb_084303_010 Hb_000413_050 Hb_000413_050 Hb_002244_020--Hb_000413_050 Hb_003038_230 Hb_003038_230 Hb_002244_020--Hb_003038_230 Hb_002244_020--Hb_000486_020 Hb_000002_500 Hb_000002_500 Hb_000127_100--Hb_000002_500 Hb_000116_220 Hb_000116_220 Hb_000127_100--Hb_000116_220 Hb_000618_110 Hb_000618_110 Hb_000127_100--Hb_000618_110 Hb_002818_150 Hb_002818_150 Hb_000127_100--Hb_002818_150 Hb_000127_100--Hb_004117_370 Hb_006618_110 Hb_006618_110 Hb_000486_020--Hb_006618_110 Hb_010534_040 Hb_010534_040 Hb_000486_020--Hb_010534_040 Hb_001606_010 Hb_001606_010 Hb_000486_020--Hb_001606_010 Hb_010584_020 Hb_010584_020 Hb_000486_020--Hb_010584_020 Hb_010136_010 Hb_010136_010 Hb_000486_020--Hb_010136_010 Hb_001926_070 Hb_001926_070 Hb_000486_020--Hb_001926_070 Hb_012833_010 Hb_012833_010 Hb_004117_370--Hb_012833_010 Hb_000107_090 Hb_000107_090 Hb_004117_370--Hb_000107_090 Hb_000167_100 Hb_000167_100 Hb_004117_370--Hb_000167_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.660697 3.00664 11.3997 6.20136 0.0934565 0.0797981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202778 0.141824 0.0336191 0.44433 10.1536

CAGE analysis