Hb_000413_050

Information

Type -
Description -
Location Contig413: 56399-59384
Sequence    

Annotation

kegg
ID vvi:100264251
description transcription factor bHLH112
nr
ID XP_012091443.1
description PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
swissprot
ID Q94JL3
description Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1
trembl
ID A0A067JLF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21311 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh112 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40919: 56369-56818 , PASA_asmbl_40920: 57611-59278
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000413_050 0.0 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
2 Hb_029695_090 0.0673432925 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
3 Hb_000116_160 0.0697840584 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
4 Hb_000007_330 0.0774459929 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
5 Hb_005488_210 0.0827026982 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
6 Hb_127629_010 0.0999955627 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
7 Hb_005890_010 0.1026882537 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
8 Hb_001942_010 0.1085909409 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
9 Hb_001926_070 0.1088143789 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
10 Hb_007007_100 0.1116756217 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
11 Hb_004117_380 0.1118048467 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
12 Hb_000413_190 0.1155855206 - - PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Pyrus x bretschneideri]
13 Hb_002284_160 0.115965901 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_012395_090 0.1164724177 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
15 Hb_004223_150 0.1167742499 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
16 Hb_010136_010 0.1175589067 - - Putative receptor-like protein kinase [Glycine soja]
17 Hb_002244_020 0.1178872489 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
18 Hb_011909_050 0.1181574069 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
19 Hb_011013_040 0.1182221609 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
20 Hb_000312_100 0.1192373173 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000413_050 Hb_000413_050 Hb_029695_090 Hb_029695_090 Hb_000413_050--Hb_029695_090 Hb_000116_160 Hb_000116_160 Hb_000413_050--Hb_000116_160 Hb_000007_330 Hb_000007_330 Hb_000413_050--Hb_000007_330 Hb_005488_210 Hb_005488_210 Hb_000413_050--Hb_005488_210 Hb_127629_010 Hb_127629_010 Hb_000413_050--Hb_127629_010 Hb_005890_010 Hb_005890_010 Hb_000413_050--Hb_005890_010 Hb_004223_150 Hb_004223_150 Hb_029695_090--Hb_004223_150 Hb_029695_090--Hb_000007_330 Hb_011472_030 Hb_011472_030 Hb_029695_090--Hb_011472_030 Hb_012395_090 Hb_012395_090 Hb_029695_090--Hb_012395_090 Hb_000881_020 Hb_000881_020 Hb_029695_090--Hb_000881_020 Hb_000116_160--Hb_005890_010 Hb_008406_060 Hb_008406_060 Hb_000116_160--Hb_008406_060 Hb_000116_160--Hb_005488_210 Hb_000116_160--Hb_000007_330 Hb_001926_070 Hb_001926_070 Hb_000116_160--Hb_001926_070 Hb_000007_330--Hb_005488_210 Hb_000007_330--Hb_001926_070 Hb_007007_100 Hb_007007_100 Hb_000007_330--Hb_007007_100 Hb_000890_170 Hb_000890_170 Hb_000007_330--Hb_000890_170 Hb_005488_210--Hb_007007_100 Hb_005488_210--Hb_005890_010 Hb_000236_130 Hb_000236_130 Hb_005488_210--Hb_000236_130 Hb_004346_050 Hb_004346_050 Hb_005488_210--Hb_004346_050 Hb_008412_040 Hb_008412_040 Hb_127629_010--Hb_008412_040 Hb_001115_070 Hb_001115_070 Hb_127629_010--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_127629_010--Hb_002284_160 Hb_004117_380 Hb_004117_380 Hb_127629_010--Hb_004117_380 Hb_000002_500 Hb_000002_500 Hb_127629_010--Hb_000002_500 Hb_010136_010 Hb_010136_010 Hb_127629_010--Hb_010136_010 Hb_005890_010--Hb_001926_070 Hb_005890_010--Hb_004117_380 Hb_000343_050 Hb_000343_050 Hb_005890_010--Hb_000343_050 Hb_032731_010 Hb_032731_010 Hb_005890_010--Hb_032731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0690599 2.58766 10.7498 6.67221 0 0.0562945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0412035 0 0.0246228 7.93389

CAGE analysis