Hb_000007_330

Information

Type -
Description -
Location Contig7: 321684-322444
Sequence    

Annotation

kegg
ID vvi:104878965
description E3 ubiquitin-protein ligase RNF38-like
nr
ID XP_012082150.1
description PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
swissprot
ID Q9LZJ6
description RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1
trembl
ID A0A067JZM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18248 PE=4 SV=1
Gene Ontology
ID GO:0046872
description probable e3 ubiquitin-protein ligase rha2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54760: 321977-322252 , PASA_asmbl_54761: 322061-322179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_330 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
2 Hb_005488_210 0.0520471377 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
3 Hb_001926_070 0.0688494767 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
4 Hb_007007_100 0.0729585801 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
5 Hb_000413_050 0.0774459929 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
6 Hb_000890_170 0.0783364952 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
7 Hb_029695_090 0.0826365876 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
8 Hb_001606_010 0.0871337561 - - kinase, putative [Ricinus communis]
9 Hb_011013_040 0.0873966018 transcription factor TF Family: C2C2-YABBY unknown [Populus trichocarpa]
10 Hb_000236_130 0.0911664645 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
11 Hb_000116_160 0.0925123145 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
12 Hb_010136_010 0.0943889482 - - Putative receptor-like protein kinase [Glycine soja]
13 Hb_000313_250 0.0957073723 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
14 Hb_005890_010 0.0972571964 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
15 Hb_000005_060 0.1009842628 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
16 Hb_000302_360 0.1028476546 - - beta-carotene hydroxylase, putative [Ricinus communis]
17 Hb_012395_090 0.1030035633 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
18 Hb_000486_020 0.1037026817 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
19 Hb_000155_020 0.1040094547 - - PREDICTED: triose phosphate/phosphate translocator TPT, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_032731_010 0.1040355537 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000007_330 Hb_000007_330 Hb_005488_210 Hb_005488_210 Hb_000007_330--Hb_005488_210 Hb_001926_070 Hb_001926_070 Hb_000007_330--Hb_001926_070 Hb_007007_100 Hb_007007_100 Hb_000007_330--Hb_007007_100 Hb_000413_050 Hb_000413_050 Hb_000007_330--Hb_000413_050 Hb_000890_170 Hb_000890_170 Hb_000007_330--Hb_000890_170 Hb_029695_090 Hb_029695_090 Hb_000007_330--Hb_029695_090 Hb_005488_210--Hb_007007_100 Hb_005488_210--Hb_000413_050 Hb_005890_010 Hb_005890_010 Hb_005488_210--Hb_005890_010 Hb_000236_130 Hb_000236_130 Hb_005488_210--Hb_000236_130 Hb_004346_050 Hb_004346_050 Hb_005488_210--Hb_004346_050 Hb_001606_010 Hb_001606_010 Hb_001926_070--Hb_001606_010 Hb_032731_010 Hb_032731_010 Hb_001926_070--Hb_032731_010 Hb_001677_170 Hb_001677_170 Hb_001926_070--Hb_001677_170 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010 Hb_007007_100--Hb_000890_170 Hb_000313_250 Hb_000313_250 Hb_007007_100--Hb_000313_250 Hb_007007_100--Hb_000236_130 Hb_006620_030 Hb_006620_030 Hb_007007_100--Hb_006620_030 Hb_000413_050--Hb_029695_090 Hb_000116_160 Hb_000116_160 Hb_000413_050--Hb_000116_160 Hb_127629_010 Hb_127629_010 Hb_000413_050--Hb_127629_010 Hb_000413_050--Hb_005890_010 Hb_000890_170--Hb_000236_130 Hb_000890_170--Hb_000313_250 Hb_000890_170--Hb_001606_010 Hb_000294_020 Hb_000294_020 Hb_000890_170--Hb_000294_020 Hb_004223_150 Hb_004223_150 Hb_029695_090--Hb_004223_150 Hb_011472_030 Hb_011472_030 Hb_029695_090--Hb_011472_030 Hb_012395_090 Hb_012395_090 Hb_029695_090--Hb_012395_090 Hb_000881_020 Hb_000881_020 Hb_029695_090--Hb_000881_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.07539 16.1212 7.79725 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0695402 0 0.2554 10.503

CAGE analysis