Hb_000890_170

Information

Type -
Description -
Location Contig890: 147706-154058
Sequence    

Annotation

kegg
ID rcu:RCOM_0680290
description acyl-CoA binding protein, putative
nr
ID XP_012069388.1
description PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
swissprot
ID Q9MA55
description Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1
trembl
ID A0A067L679
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02008 PE=4 SV=1
Gene Ontology
ID GO:0005829
description acyl- -binding domain-containing protein 4-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61612: 147706-149905 , PASA_asmbl_61613: 150794-151044 , PASA_asmbl_61614: 152586-154048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_170 0.0 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
2 Hb_000236_130 0.0649954325 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
3 Hb_000313_250 0.0747309918 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
4 Hb_000007_330 0.0783364952 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
5 Hb_001926_070 0.0795325677 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
6 Hb_001606_010 0.0802038176 - - kinase, putative [Ricinus communis]
7 Hb_000294_020 0.0841687912 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
8 Hb_003777_090 0.0886809934 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
9 Hb_032731_010 0.0887361444 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
10 Hb_007007_100 0.0900239699 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
11 Hb_005488_210 0.0932021312 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
12 Hb_010534_040 0.0950058718 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
13 Hb_000486_020 0.0967284756 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
14 Hb_000692_060 0.0972812961 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_006618_110 0.0990857654 - - -
16 Hb_092516_010 0.099680746 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
17 Hb_001655_080 0.1001725478 - - Purple acid phosphatase precursor, putative [Ricinus communis]
18 Hb_000302_360 0.102024311 - - beta-carotene hydroxylase, putative [Ricinus communis]
19 Hb_001680_020 0.1035778773 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]
20 Hb_027684_010 0.1055429709 - - hypothetical protein RCOM_0504250 [Ricinus communis]

Gene co-expression network

sample Hb_000890_170 Hb_000890_170 Hb_000236_130 Hb_000236_130 Hb_000890_170--Hb_000236_130 Hb_000313_250 Hb_000313_250 Hb_000890_170--Hb_000313_250 Hb_000007_330 Hb_000007_330 Hb_000890_170--Hb_000007_330 Hb_001926_070 Hb_001926_070 Hb_000890_170--Hb_001926_070 Hb_001606_010 Hb_001606_010 Hb_000890_170--Hb_001606_010 Hb_000294_020 Hb_000294_020 Hb_000890_170--Hb_000294_020 Hb_022167_010 Hb_022167_010 Hb_000236_130--Hb_022167_010 Hb_000692_060 Hb_000692_060 Hb_000236_130--Hb_000692_060 Hb_003777_090 Hb_003777_090 Hb_000236_130--Hb_003777_090 Hb_000236_130--Hb_000294_020 Hb_179129_010 Hb_179129_010 Hb_000236_130--Hb_179129_010 Hb_110266_010 Hb_110266_010 Hb_000313_250--Hb_110266_010 Hb_092516_010 Hb_092516_010 Hb_000313_250--Hb_092516_010 Hb_002007_120 Hb_002007_120 Hb_000313_250--Hb_002007_120 Hb_021443_060 Hb_021443_060 Hb_000313_250--Hb_021443_060 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_005488_210 Hb_005488_210 Hb_000007_330--Hb_005488_210 Hb_000007_330--Hb_001926_070 Hb_007007_100 Hb_007007_100 Hb_000007_330--Hb_007007_100 Hb_000413_050 Hb_000413_050 Hb_000007_330--Hb_000413_050 Hb_029695_090 Hb_029695_090 Hb_000007_330--Hb_029695_090 Hb_001926_070--Hb_001606_010 Hb_032731_010 Hb_032731_010 Hb_001926_070--Hb_032731_010 Hb_001677_170 Hb_001677_170 Hb_001926_070--Hb_001677_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010 Hb_001352_030 Hb_001352_030 Hb_001606_010--Hb_001352_030 Hb_000486_020 Hb_000486_020 Hb_001606_010--Hb_000486_020 Hb_001606_010--Hb_032731_010 Hb_003531_050 Hb_003531_050 Hb_001606_010--Hb_003531_050 Hb_000294_020--Hb_003777_090 Hb_000483_470 Hb_000483_470 Hb_000294_020--Hb_000483_470 Hb_000294_020--Hb_092516_010 Hb_000928_100 Hb_000928_100 Hb_000294_020--Hb_000928_100 Hb_000294_020--Hb_022167_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0143026 2.67181 14.2922 4.88444 0.0272372 0.02586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0486725 0.0383006 0 0.466163 8.12799

CAGE analysis