Hb_010534_040

Information

Type -
Description -
Location Contig10534: 33360-34532
Sequence    

Annotation

kegg
ID rcu:RCOM_1719530
description hypothetical protein
nr
ID XP_012085094.1
description PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17536 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01819: 33307-35048
cDNA
(Sanger)
(ID:Location)		 021_P14.ab1: 34238-34905 , 040_E04.ab1: 34190-34905 , 043_J13.ab1: 34234-34905

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010534_040 0.0 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
2 Hb_000302_360 0.0707752319 - - beta-carotene hydroxylase, putative [Ricinus communis]
3 Hb_000486_020 0.0772671732 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
4 Hb_001352_030 0.0822030516 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
5 Hb_001606_010 0.0877211209 - - kinase, putative [Ricinus communis]
6 Hb_000645_260 0.0930374376 - - PREDICTED: uncharacterized protein LOC105643508 [Jatropha curcas]
7 Hb_002890_160 0.0937055129 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
8 Hb_000890_170 0.0950058718 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
9 Hb_003531_050 0.0958428496 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
10 Hb_006618_110 0.0992271376 - - -
11 Hb_132356_010 0.1000826664 - - receptor serine/threonine kinase, putative [Ricinus communis]
12 Hb_001926_070 0.1049211192 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
13 Hb_010584_020 0.1053105956 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
14 Hb_001051_010 0.1095237481 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
15 Hb_000007_330 0.1096143769 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
16 Hb_005892_050 0.1103524954 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
17 Hb_014720_140 0.1108208856 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
18 Hb_015934_060 0.1108981863 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
19 Hb_000313_250 0.1125707549 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
20 Hb_001301_260 0.1129342789 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010534_040 Hb_010534_040 Hb_000302_360 Hb_000302_360 Hb_010534_040--Hb_000302_360 Hb_000486_020 Hb_000486_020 Hb_010534_040--Hb_000486_020 Hb_001352_030 Hb_001352_030 Hb_010534_040--Hb_001352_030 Hb_001606_010 Hb_001606_010 Hb_010534_040--Hb_001606_010 Hb_000645_260 Hb_000645_260 Hb_010534_040--Hb_000645_260 Hb_002890_160 Hb_002890_160 Hb_010534_040--Hb_002890_160 Hb_001269_060 Hb_001269_060 Hb_000302_360--Hb_001269_060 Hb_000302_360--Hb_000645_260 Hb_000302_360--Hb_001606_010 Hb_014720_140 Hb_014720_140 Hb_000302_360--Hb_014720_140 Hb_015934_060 Hb_015934_060 Hb_000302_360--Hb_015934_060 Hb_006618_110 Hb_006618_110 Hb_000486_020--Hb_006618_110 Hb_000486_020--Hb_001606_010 Hb_010584_020 Hb_010584_020 Hb_000486_020--Hb_010584_020 Hb_010136_010 Hb_010136_010 Hb_000486_020--Hb_010136_010 Hb_001926_070 Hb_001926_070 Hb_000486_020--Hb_001926_070 Hb_003531_050 Hb_003531_050 Hb_001352_030--Hb_003531_050 Hb_000265_170 Hb_000265_170 Hb_001352_030--Hb_000265_170 Hb_001352_030--Hb_001606_010 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_001352_030--Hb_002890_160 Hb_001606_010--Hb_001926_070 Hb_000890_170 Hb_000890_170 Hb_001606_010--Hb_000890_170 Hb_032731_010 Hb_032731_010 Hb_001606_010--Hb_032731_010 Hb_001606_010--Hb_003531_050 Hb_000982_100 Hb_000982_100 Hb_000645_260--Hb_000982_100 Hb_000645_260--Hb_001269_060 Hb_000645_260--Hb_014720_140 Hb_033006_020 Hb_033006_020 Hb_000645_260--Hb_033006_020 Hb_001377_120 Hb_001377_120 Hb_000645_260--Hb_001377_120 Hb_002890_160--Hb_003531_050 Hb_003020_070 Hb_003020_070 Hb_002890_160--Hb_003020_070 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0729951 4.01713 18.3892 8.46926 0.0353949 0.141171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.295162 0.121873 1.43262 13.2181

CAGE analysis